UFO03821.5prime Sequence
823 bp (823 high quality bases) assembled on 2009-02-13
> UFO03821.5prime
CAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAGGAGCCTAC
TGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGCGGGGTCTG
TCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCCATGCCGCG
ACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGACCATGCTG
CCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAGGATCGCAA
GTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGTTGAGGTTG
CCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGTGGGAGCTG
CGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTACACATTGTT
TTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCACCCAGGAGG
CAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTCTGTGCCTG
GTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATGGATGTGGG
GGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCTGCCCCTGC
TCACCTTTATCCATGCGTTAGGATGTGGGTTTGATCTATTACTCCTTTCC
GTACCTTAGCGTGGCCATATCCATGGTAAGCCAAATGCCATCCACTATTC
CCTCAAACTGGAATCAAACCCTAAAGGCATTGGGTTCACTCGTCGGTGTG
GGAGTTAAAAAACGTGGCAATCATAGCTGTGCCCGTATGTTGTTGGCCTA
CGGCCTCACTCCCTGATTACCAC
UFO03821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2126-RB | 1317 | CG2126-RB | 100..913 | 8..823 | 3835 | 98.5 | Plus |
| CG2126-RA | 1317 | CG2126-RA | 100..913 | 8..823 | 3835 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31775983..31776196 | 464..251 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 31775753..31775920 | 631..464 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 31776247..31776383 | 252..116 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 31776443..31776553 | 118..8 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 31775559..31775693 | 776..638 | 470 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:10 has no hits.
UFO03821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:50 Download gff for
UFO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 54..867 | 8..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:12 Download gff for
UFO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 100..913 | 8..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:27 Download gff for
UFO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 100..913 | 8..823 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:27 Download gff for
UFO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31775559..31775693 | 638..776 | 95 | <- | Minus |
| 3R | 31775748..31775920 | 464..637 | 99 | <- | Minus |
| 3R | 31775984..31776196 | 251..463 | 100 | <- | Minus |
| 3R | 31776249..31776382 | 117..250 | 100 | <- | Minus |
| 3R | 31776445..31776553 | 8..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:12 Download gff for
UFO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27602167..27602275 | 8..116 | 100 | | Minus |
| arm_3R | 27601281..27601415 | 638..776 | 95 | <- | Minus |
| arm_3R | 27601470..27601642 | 464..637 | 99 | <- | Minus |
| arm_3R | 27601706..27601918 | 251..463 | 100 | <- | Minus |
| arm_3R | 27601971..27602104 | 117..250 | 100 | <- | Minus |
