UFO03824.5prime Sequence
1096 bp (1011 high quality bases) assembled on 2009-02-13
> UFO03824.5prime
CAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGGGCGCCCAG
GCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATCGCCGCATC
TCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGACAAGAGCG
CCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCAAGCAGATC
CTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAGAACTACGA
GCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTTCTATATCC
AGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGATTAAGGCC
CATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGATACGGCGGA
GGAGTCTCAGAGCAGATCGCGGCAGCGACGCGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGACCCTGAATCGCCAGCGGCATCAGCACCTTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTTAATCAAAACTGGTGAAACTCACCCAGGGATGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCCACCGTAAC
ACGCCACATCCTTGCGAATAATATGTTGTAAGAACTGCCCGGAAATTCGT
CGTGTAATCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGGCCA
ACCGGGGTAACAAGGTGAAACTTATCCCCATATTCACCCAGCTCTC
UFO03824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blp-RB | 964 | CG5268-RB | 235..658 | 8..431 | 2120 | 100 | Plus |
| blp-RA | 955 | CG5268-RA | 226..649 | 8..431 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15934372..15934634 | 169..431 | 1315 | 100 | Plus |
| 3R | 32079331 | 3R | 15934151..15934315 | 8..172 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:28 has no hits.
UFO03824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:56 Download gff for
UFO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 214..644 | 1..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:56 Download gff for
UFO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 231..661 | 1..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:59 Download gff for
UFO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 219..649 | 1..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:59 Download gff for
UFO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15934144..15934314 | 1..171 | 97 | -> | Plus |
| 3R | 15934375..15934634 | 172..431 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:56 Download gff for
UFO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11759866..11760036 | 1..171 | 97 | -> | Plus |
| arm_3R | 11760097..11760356 | 172..431 | 100 | == | Plus |
