UFO03826.5prime Sequence
521 bp (314 high quality bases) assembled on 2009-02-13
> UFO03826.5prime
CAGTCGACATGTTCGCATCTGTGGAATTAAGCTCATATCGCGATCAGCAC
TTCAAGGGCTCGCGCTCCGAGCAAGAGCGATCGCTCCGCGACTCGTGTAC
ACTTTACGTGGGAAACTTGAGCTTCTACACCACCGAGGAGCAGATCCACG
AGCTCTTCTCCCGCTGCGGCGATGTTCGTGTGATTGTGATGGGCCTGGAC
AAGTATAAGAAGACGCCCTGCGGCTTCTGCTTCGTGGAGTACTATGTCCG
ATCGGAGGCGGAGGCGGCCATGAGATTTGTGAATGGCACTCGCTTGGACG
ACCGTCTGATTCGTGTGGACTGGGACGCCGGGTTCCGTGGAAGGGCAGGG
CAGTATGGGACGCGGGCAAAACCCGGGGGGACAGGTGGCAAAATGAATAC
CCGCCCGGAATTTCAAAGCCCGGCCGCGGGGGGTTATGGGAAAACTGGTT
TTCCCCAAAAAATTGGCCCCAACCGGAAAACCCGGCAAGTTTTTTAAACC
TTTTTTTTGGGCCCCGGGGCC
UFO03826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp20-RA | 600 | CG12357-RA | 69..491 | 9..443 | 1750 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18164830..18165049 | 55..274 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 18165172..18165234 | 273..335 | 300 | 98.4 | Plus |
| 3R | 32079331 | 3R | 18164729..18164777 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:59 has no hits.
UFO03826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:46 Download gff for
UFO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp20-RA | 67..497 | 9..453 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:38 Download gff for
UFO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp20-RA | 69..499 | 9..453 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:49 Download gff for
UFO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp20-RA | 69..499 | 9..453 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:49 Download gff for
UFO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18164729..18164776 | 9..56 | 100 | -> | Plus |
| 3R | 18164832..18165049 | 57..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:38 Download gff for
UFO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13990451..13990498 | 9..56 | 100 | -> | Plus |
| arm_3R | 13990554..13990771 | 57..274 | 100 | -> | Plus |
