UFO03829.5prime Sequence
1114 bp (1002 high quality bases) assembled on 2009-02-13
> UFO03829.5prime
CAGTCGACATGCTCGTCAAGTTGTGCGCTATCCTTTTGGCCCTTGGCCTT
AGTCAGGCCATTGCGTATCCGCCCCTGCAACTTAGTAATCCGCACCAGAA
CCTAGTGCAGTTCCTGATACAATCACGTGATCTCGGCAACGATGGTGGAC
ATACCCTTGAATGCTTGGATTATTATCTTCCCCTGCTGAACGACGTTGTG
GAGACCTACAAGGCTGATTTAAATGCGTGTTTGGAAACAGCTAGTCAGGA
GGTCTCACAGATCAACGACAATACCAAGGAAGAACGAGATGCCATCGATG
CCTCAGCCAAGAGCTCCTGCGATGCCCTCACCGCATGTAGTACAAAGGAA
GCGGCCATAGATTACTTCCAGTGCTACAGTGAAGCCGGCTCCAACAACAC
CAAAACCATGTTCACCATCTCCGCTAACGCTTCGGAGCTGCTGGCTGCTG
TGGAGGAGGAAGTGCGTCTCATCAAGGTGAAGGAAGAGGTGTGCACCAAC
AAGACCCAGAGGGCCTATGGAGAGAGCTACGGTCAGCTGTACGCGGATTT
GGGTGATTGCATTGCTGGCGCTCCAATTCCATCGGAATCCACAAGCACCC
AGGCCTCCTCCACGGATTCTTCGACTGATTCGACGTCCGCTTCCACCGAA
TCCTCTACTGATTCGTCCTCCGTTTCCACCGAATCTTCTACTGATTCGTC
CTCCGTTTCCACCGAATCTTCTACTGATTCCTCGACTGATTCTTCCTCCG
CTTCCACCGAATCGTCTACTGATTCGTCCTCCGTCTCCACTGAATCCTCA
ACGGATTCCTCAACTGATTCGTCCTCCGTGTCACCGAATCATCCACTGAT
TCGTCGACAGACTCCTCATCCGCTTCACCGAATCCTCTACTGAATCCTCG
TCTGATTCGCCTCCGATTCTACCGAATCCTCTACTGATTCTTCATCTGTT
TCACGGAATCCACAACAAGTAGTGTGAAAAGAAGCGGCTCTGAGGAGATT
GAATTCTTCTCCTCTCAAACAGCATGACCTCAGAGATCTAGGTCCTCGGT
TGGTTAAAATTACGCAGCTTCAGAAATCGTGTGGCGCCGCGCCAGGTATG
GTCATAACTAACTA
UFO03829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1221 | CG10911-RA | 61..1095 | 9..1031 | 4815 | 98.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 694..1007 | 609..908 | 480 | 77.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 770..995 | 640..852 | 445 | 81 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 661..962 | 642..952 | 440 | 77.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 692..905 | 718..940 | 415 | 80.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 778..947 | 615..772 | 400 | 83.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 667..824 | 726..893 | 350 | 82.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 859..1022 | 651..802 | 335 | 81.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 703..854 | 807..966 | 255 | 79.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 937..1016 | 606..685 | 205 | 83.8 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 946..1016 | 648..718 | 205 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18052741..18053332 | 974..387 | 2745 | 99.2 | Minus |
| 2R | 25286936 | 2R | 18053628..18054006 | 387..9 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18052863..18053001 | 778..640 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052764..18053077 | 908..609 | 400 | 77.4 | Minus |
| 2R | 25286936 | 2R | 18052941..18053079 | 855..718 | 375 | 86.3 | Minus |
| 2R | 25286936 | 2R | 18052944..18053110 | 808..642 | 370 | 81.4 | Minus |
| 2R | 25286936 | 2R | 18052824..18052993 | 772..615 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052749..18052912 | 802..651 | 305 | 80.5 | Minus |
| 2R | 25286936 | 2R | 18053022..18053104 | 808..726 | 265 | 88 | Minus |
| 2R | 25286936 | 2R | 18052755..18052834 | 685..606 | 205 | 83.8 | Minus |
| 2R | 25286936 | 2R | 18052755..18052825 | 718..648 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:52 has no hits.
UFO03829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:44 Download gff for
UFO03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 59..1105 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:35 Download gff for
UFO03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1107 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:46 Download gff for
UFO03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1107 | 9..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:46 Download gff for
UFO03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18053629..18054006 | 9..386 | 100 | | Minus |
| 2R | 18052741..18053332 | 387..974 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:35 Download gff for
UFO03829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13940246..13940837 | 387..974 | 99 | <- | Minus |
| arm_2R | 13941134..13941511 | 9..386 | 100 | | Minus |
