UFO03830.5prime Sequence
1027 bp (989 high quality bases) assembled on 2009-02-13
> UFO03830.5prime
CAGTCGACATGGATCTGTTGTTTCTCAGCCGGCGAATTTTCCTGGGCGAT
GGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGTGGATACAGAGGG
CATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTAATACCTATTTGT
ACAACACAGAATCCGAATCGGTTTACGATTTCGGGGACCTGGTACTGATG
CCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCCGGGTCGCAAGGA
CTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCGCCGGTGGCTTCA
CCACAATCATCGATCGACCCACCAACGCGCAACCACCCACCGTTAGTGTG
GCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAAGATCTATGTGGA
CGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGGATCAGCTGGCTG
CACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACATTGTGCGATCCC
GCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGAATCTCAGCTGGA
GGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAGGGGAAGCAATCG
TAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATCCATCCGGACGAG
GAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCGTCCACCCCAAAT
GGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGAATCGCCACCCGC
GGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAAAGTCTGCCGCTG
GTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGTGGACACTGTCCG
CATTACCTGGCCTGGCGGCCGAGGATGTGCCCGATTGCGGACGGAGTTCA
GACCTGGTCCCCGATTCGGAGCGTCGCATCATGAACAATTGGTGGCAGGG
TCTTGAACCGGGCGGAACCATCCGCATGATGGGAAGTGATATCGCGGGCA
CGCCGCGGTGCACTGGCTTCCACTGCG
UFO03830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6106-RB | 2446 | CG6106-RB | 23..1034 | 9..1013 | 4615 | 97.8 | Plus |
| CG6106-RA | 1878 | CG6106-RA | 23..1034 | 9..1013 | 4615 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18359064..18359558 | 114..608 | 2475 | 100 | Plus |
| X | 23542271 | X | 18359930..18360320 | 605..990 | 1445 | 95.4 | Plus |
| X | 23542271 | X | 18358903..18359008 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:28 has no hits.
UFO03830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:44 Download gff for
UFO03830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 19..1018 | 6..999 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:24 Download gff for
UFO03830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 21..1020 | 6..999 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:27 Download gff for
UFO03830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 21..1020 | 6..999 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:27 Download gff for
UFO03830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18358901..18359008 | 6..114 | 99 | -> | Plus |
| X | 18359065..18359555 | 115..605 | 100 | -> | Plus |
| X | 18359931..18360331 | 606..999 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:24 Download gff for
UFO03830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18252934..18253041 | 6..114 | 99 | -> | Plus |
| arm_X | 18253098..18253588 | 115..605 | 100 | -> | Plus |
| arm_X | 18253964..18254364 | 606..999 | 95 | | Plus |
