UFO03832.5prime Sequence
949 bp (949 high quality bases) assembled on 2009-02-13
> UFO03832.5prime
CAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCTGCCTGAGC
TTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTATAAAATCTA
TGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGCTCTGTCCG
AACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAATTGAATGCT
GGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTGAACTTTGT
GCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAACCGAAATG
TGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGTTACGACAT
TGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTACAACCATGA
GGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCCGCGTAGGG
TTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGCTGAAAACC
ATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTGATCCTCGT
AGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGCTGCTACTT
ATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGGATCTTCTG
CTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGATGGCTATGA
GTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAACCAGGAAAC
CCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACTTTGACTTC
CACTGGAACGAAGAGGGTGCCTCGGATGATCCCTGTGATAACATATATGC
TGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTTGGGGATCTCA
TTCATACTATGTGGACCGCGGACAGATGTATTTGACTTTGCTTTCTATG
UFO03832.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18417-RA | 1480 | CG18417-RA | 26..963 | 9..945 | 4620 | 99.6 | Plus |
| CG8562-RA | 1483 | CG8562-RA | 495..746 | 492..743 | 335 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7400229..7401087 | 88..945 | 4200 | 99.5 | Plus |
| 3L | 28110227 | 3L | 7400095..7400182 | 9..96 | 425 | 98.9 | Plus |
| 3L | 28110227 | 3L | 7398864..7399082 | 492..710 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:04 has no hits.
UFO03832.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:43 Download gff for
UFO03832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 19..961 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:08 Download gff for
UFO03832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 26..968 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:38 Download gff for
UFO03832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 26..968 | 9..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:38 Download gff for
UFO03832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7400095..7400174 | 9..88 | 100 | -> | Plus |
| 3L | 7400230..7401092 | 89..949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:08 Download gff for
UFO03832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7393195..7393274 | 9..88 | 100 | -> | Plus |
| arm_3L | 7393330..7394192 | 89..949 | 99 | | Plus |
