UFO03833.5prime Sequence
1057 bp (954 high quality bases) assembled on 2009-02-13
> UFO03833.5prime
CAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGCGCAGGAAC
ATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGCTCCACCAC
ATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGTTGATGTGG
CGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATTGGCAGTCC
AGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGGGACATGCT
GGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGGCCTGGATG
GTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTGGCGATTTC
CAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTCACCTTTGG
GTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAAGCTACACA
CCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCCTAAATGTG
GGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCGGCGTCTTT
GTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGAACGGGCTG
AGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGGGCGCCAAG
TCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCTGCAGCGGC
GGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACTTGACGAGC
TATTGGCCCATGACCGATACGCAACTGGATATAGGCTCTGGACCCATTAC
GATGCCAATGCCTATGGTGCAGCGGCCACACCTCATCGGCAGCAGCAAAC
GGTGTGGAGGATTGCTGGATCCGTTTGGATGAAGCAGCTTCTAACCATCC
GTTGGCGCGCCGGGCCCAGTAATGTGTTTATCATAATCTTATCATATCAT
AATCCCAACTATGCTCTAGGAGATCCCTGTCTTGACTAGGGCTTGGATTC
TCACAATAAAAACGCCCGGCGGCAACGCAGCGTTCTAAACATCTCAATAG
GATTTTC
UFO03833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 1207 | CG15727-RB | 138..1019 | 9..883 | 4170 | 98.8 | Plus |
| Aven-RA | 1165 | CG15727-RA | 96..977 | 9..883 | 4170 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12628603..12629410 | 844..38 | 3880 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:09 has no hits.
UFO03833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:42 Download gff for
UFO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-RA | 89..982 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:58 Download gff for
UFO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..982 | 1..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:15 Download gff for
UFO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..982 | 1..890 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:15 Download gff for
UFO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12628548..12629410 | 38..898 | 97 | <- | Minus |
| X | 12629475..12629510 | 1..37 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:58 Download gff for
UFO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12522581..12523443 | 38..898 | 97 | <- | Minus |
| arm_X | 12523508..12523543 | 1..37 | 91 | | Minus |
