UFO03835.5prime Sequence
908 bp (891 high quality bases) assembled on 2009-02-13
> UFO03835.5prime
CAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATGCCACGCTG
CGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAATCTCATGTA
TCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAATTGCCAGCA
TGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGCACCTGGAA
CCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGCGTTGTGGA
CCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGCAAAGAATC
CAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGGATCTGCTG
ATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGTCACTGCGG
CCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAAGCGGATAG
CCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTGTGGCTCCA
TCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCCCTCATCGA
TGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAAGTTCACAT
CCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCACCCGAAAAT
TCGGTGACCGGAGGTGCTATCACCTGCCCAGTGGCTCCAGAAGCTTAGCA
ATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCTGATGGG
TGAAACCGGGAATGCCCCTATCTGGATATCTACGATCCACAAAGGATTCC
TATCCGTATCACACGTTGTACGTTCTACCATGTTTCCGGGGAGTTCGCTA
TGCTGTATCATGCCGCCAAGGTCGGTGCCCTTTGACCTCAAGTGTGCCCG
TGTTGGAA
UFO03835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbgs-RB | 1894 | CG10335-RB | 71..963 | 9..907 | 4165 | 98.1 | Plus |
| Pbgs-RA | 1378 | CG10335-RA | 71..963 | 9..907 | 4165 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12270397..12271275 | 892..9 | 4005 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:15 has no hits.
UFO03835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:49 Download gff for
UFO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 56..947 | 9..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:01 Download gff for
UFO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..963 | 9..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:20 Download gff for
UFO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbgs-RA | 71..963 | 9..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:20 Download gff for
UFO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12270382..12271275 | 9..908 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:01 Download gff for
UFO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12263482..12264375 | 9..908 | 98 | | Minus |
