UFO03836.5prime Sequence
1121 bp (963 high quality bases) assembled on 2009-02-13
> UFO03836.5prime
CAGTCGACATGGTTTGCGCTTTGGGTATTGAAGGCAGTGCCAATAAAATT
GGCATTGGCATAATTCGAGATGGTAAAGTACTGGCGAACGTACGTAGAAC
GTACATTACCCCACCAGGAGAAGGTTTCCTGCCCAAGGAAACGGCCAAAC
ATCACAGGGAAGCCATCCTGGGCTTGGTGGAATCCAGTCTAAAGGAAGCC
CAATTGAAATCCTCTGATCTAGATGTTATTTGTTACACAAAAGGCCCAGG
AATGGCTCCTCCTTTGCTGGTTGGCGCCATTGTGGCTCGCACTTTGTCGC
TCTTGTGGAATATCCCGCTGCTGGGCGTAAATCACTGCATTGGACACATC
GAGATGGGTCGCCTGATCACCGGTGCCCAGAATCCTACAGTTCTCTATGT
GAGCGGTGGAAACACACAGGTTATTGCCTACTCCAATAAGCGATATCGCA
TCTTTGGCGAAACTATAGACATTGCAGTGGGCAATTGCCTGGATCGATTC
GCCCGCATCATTAAGCTGTCCAACGATCCTAGTCCGGGCTACAACATCGA
GCAGCTGGCCAAGTCGAGCAATCGTTATATTAAACTGCCCTATGTGGTTA
AGGGCATGGATGTCAGCTTCTCGGGGATTTTATCCTACATCGAGGACCTG
GCAGAGCCGGGCAAGAGGCAAAATAAGAGAAAAAAGCCACAGGAAGAAGA
GGTCAATAATTACAGCCAAGCCGATCTTTGCTATTCGCTGCAGGAGACCA
TCTTCGCCATGTTGGGTGGAGATCACAGAGCGCGCCATGGCACACTGCGG
CTCAAATGAGGTCCTTATAGTTGGAGGTGTGGGTTGCAATGAGCGACTCC
AGAGATGATGCGTATTATGTGCGAGGAACGCGGAGGCAACTCCTTTGCCA
CTGTGAACCGTTACTGCATAGACACGGCTAATGATTGCCCATGCTGGTTC
AAAAAATGTTCCGCTCTGGCACTAGGATGCCCTTTGAGGGAATCTTATGT
GAATCCACGAATTCCAACGGAGCAAATGTCTGTTCACTTGCGGGGATGAA
CTCAACTTTTCATGAACCCTTTCCTTGTGGGGCCCGGGCGCCCAGGATAG
TGTATCTAATGCATGAGCCAT
UFO03836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4933-RA | 1180 | CG4933-RA | 62..1076 | 7..1021 | 4745 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16352228..16352917 | 122..812 | 3405 | 99.9 | Plus |
| 3L | 28110227 | 3L | 16352969..16353182 | 809..1021 | 625 | 90.3 | Plus |
| 3L | 28110227 | 3L | 16352052..16352170 | 7..125 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:41 has no hits.
UFO03836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:48 Download gff for
UFO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 13..1027 | 7..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:07 Download gff for
UFO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 62..1076 | 7..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:05 Download gff for
UFO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 62..1076 | 7..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:05 Download gff for
UFO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16352052..16352168 | 7..123 | 100 | -> | Plus |
| 3L | 16352230..16352915 | 124..810 | 99 | -> | Plus |
| 3L | 16352971..16353182 | 811..1021 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:07 Download gff for
UFO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16345152..16345268 | 7..123 | 100 | -> | Plus |
| arm_3L | 16345330..16346015 | 124..810 | 99 | -> | Plus |
| arm_3L | 16346071..16346282 | 811..1021 | 92 | | Plus |
