UFO03837.5prime Sequence
903 bp (902 high quality bases) assembled on 2009-02-13
> UFO03837.5prime
CAGTCGACATGTCTGCCGAGGCGAATCCCGAGATGGATAAGGAGCACCAC
GAGTCCCCATTCGCAGCGAACCGCAAGGCCGGTGCCAGCGGCGCCGGCAA
ACAGGACTCGAACTGCCGCACCTGCAACGATTTCAAGTCGTGGTCCAAGC
AGCAACGCCTCATCTCCAACGTGCAGAGCGCCAAGGTGAAGCACATGGCC
GCCGCCGAAAAGCTGACCGTCAACGCCGCCGAAGATCCGCTGCCCCGCGA
CGACTGCCCGCTGGACAAGGTGAGGCTGGGAATTTCCACCTGGGGACTGC
TCCACACCATGGCCGCCTTTTACTCGGACAACCCCACGGACACCGAGAAG
CGCGACATGAAGACCTTTTTTGAGGTTCTGTCGCGCCTTTACCCCTGCGA
GTTTTGCGCCAAGGACTTTCGCACCGACCTGGACGTCAACCCCATCAATG
TGAACTCCCAAAAGGAGCTAGCACTGTGGCTGTGCAAGTTCCACAACCGA
GTGAACGACAAACTGGGCAAACCGCTCTTCGATTGCACCAAGGTGAACGA
GAGGTGGCGCGACGGCTGGCTAGACGGCTCCTGCGACGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTTGAGGTCATTACTGGATCTATCAACAGGAA
GTCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAT
GTACTGTTGGTAATTCATTAGGCATTTCTGCCGACATGGAAGCCATCCCC
AAC
UFO03837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alr-RB | 1362 | CG12534-RB | 464..1043 | 8..587 | 2900 | 100 | Plus |
| Alr-RA | 1107 | CG12534-RA | 209..788 | 8..587 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19749386..19749629 | 184..427 | 1220 | 100 | Plus |
| X | 23542271 | X | 19749131..19749312 | 8..189 | 910 | 100 | Plus |
| X | 23542271 | X | 19749689..19749848 | 428..587 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:18 has no hits.
UFO03837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:39 Download gff for
UFO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12534-RA | 207..797 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:25 Download gff for
UFO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alr-RA | 203..793 | 1..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:12 Download gff for
UFO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alr-RA | 203..793 | 1..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:12 Download gff for
UFO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19749125..19749308 | 1..185 | 97 | -> | Plus |
| X | 19749388..19749629 | 186..427 | 100 | -> | Plus |
| X | 19749689..19749853 | 428..593 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:25 Download gff for
UFO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19643158..19643341 | 1..185 | 97 | -> | Plus |
| arm_X | 19643421..19643662 | 186..427 | 100 | -> | Plus |
| arm_X | 19643722..19643886 | 428..593 | 98 | == | Plus |
