UFO03842.5prime Sequence
1138 bp (998 high quality bases) assembled on 2009-02-13
> UFO03842.5prime
CAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCGGTTGTGCG
CTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATCGAGAACGC
GGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGACAATTGTGG
ATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGAAGGTGCTC
ACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGCGGACGCGC
CCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCTGGGCCGCA
TTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCTTCTTCGCT
GGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTGGAGTTGCC
CAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCTGTTCCTGC
CCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGCCCATCTTG
CTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTGTCCAAGAT
TGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTATCCAGAAGT
TGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAGTTCCGGCC
AGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGATCCCAGCAG
CTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTCGCAGAACC
TGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACTCCTCGGGA
TCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCGTCCTCCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATATCATATCATATCCACACTAGCCTAAGGAGATCCTGGTC
ATGACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGGGCGGCAACCGA
CGTTCTGAACCATTCCGAAGGGAGTCTCGAGGTCATATCTGAATCTATAC
AAGGGTTCAAGCAGCTTTATTCCATATGCCCCGCCCGGCCACTCATCGCA
GATATGTGTGTAATACTCATGCCATCTTGCCGAATTGG
UFO03842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi20-RA | 1264 | CG15188-RA | 94..933 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6340656..6341093 | 411..848 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 6340188..6340593 | 9..414 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 513..440 | 138 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 511..440 | 126 | 63.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 510..440 | 121 | 63.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 537..440 | 118 | 59.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 503..438 | 114 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 503..440 | 113 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 511..440 | 110 | 63.9 | Minus |
UFO03842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:37 Download gff for
UFO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 88..934 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:22 Download gff for
UFO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 90..936 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:02 Download gff for
UFO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 90..936 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:02 Download gff for
UFO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6340184..6340590 | 1..411 | 99 | -> | Plus |
| 3R | 6340657..6341096 | 412..852 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:22 Download gff for
UFO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2165906..2166312 | 1..411 | 99 | -> | Plus |
| arm_3R | 2166379..2166818 | 412..852 | 99 | == | Plus |
