UFO03844.5prime Sequence
1024 bp (969 high quality bases) assembled on 2009-02-13
> UFO03844.5prime
CAGTCGACATGAGATCCGTTAAGGCAGCGATTTTGCTCGGTAGCTTTTTG
CTGCTGTTGGCAGTGCCCGTACATTCGGCACCTGGTAGCCTCAACGGTCG
AGTGGTGGGCGGTGAGGATGCCGTGAAAAATCAGTTTCCCCACCAGGTGT
CCCTGAGGAACGCCGGCTCCCACAGCTGTGGAGGTTCGATTCTGTCCAGG
AACTACGTCTTAACCGCTGCCCATTGTGTAACCAATCAGGACTCAAATGG
CAATTCCGTTCCAATTGCTGCGGAGCGTTTCACCATTCGAGCGGGCTCCA
ACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGGTAATTGTC
CACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTGCGACTAGA
GAGCCCACTGATCCTGTCCGCGAGTATTCAGCCCATCGATCTACCCACTG
CGGATACTCCAGCGGATGTGGACGTCATCATTTCCGGCTGGGGAAGGATC
AAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACCCTGAAGTC
CATTTCCTTGGAGAGGTGCGACGAACTGATCGGCTGGGGAGTCCAGAGCG
AGTTGTGCCTCATCCACGAGGCCGATAATGGAGCGTGCAATGGGGACTCC
GGTGGTCCGGCCGTATATAACAACCAAGTGGTGGGCGTGGCCGGGTTCGT
GTGGTCCGCCTGTGGAACGAGCTATCCAGATGGATATGCCAGGGTGTACT
ACCACAACGAATGGATTAAGAATAACTCGGATGTGAAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATATCAT
AATCATAATCATAATTACAACTAGCCTAAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCCACAATAAAAACGCCCGCGGCCACCGAGCGTCTGAAC
AATCCATGATGGAGGTCTGAGTCTTACTGGTCTATCACGGAATCCAAGCA
GCTCCGAATATATTACCCCCCCCC
UFO03844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 893 | CG1304-RA | 17..796 | 9..788 | 3900 | 100 | Plus |
| Ser6-RA | 901 | CG2071-RA | 36..755 | 26..745 | 2165 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20964624..20965403 | 788..9 | 3900 | 100 | Minus |
| X | 23542271 | X | 20962751..20963470 | 745..26 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:21 has no hits.
UFO03844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:27 Download gff for
UFO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 14..800 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:19 Download gff for
UFO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:59 Download gff for
UFO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:59 Download gff for
UFO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20964617..20965403 | 9..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:19 Download gff for
UFO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20835644..20836430 | 9..795 | 99 | | Minus |
