UFO03845.5prime Sequence
349 bp (268 high quality bases) assembled on 2009-02-13
> UFO03845.5prime
CAGTCGACATGGTTTACATACACTTCCCCAACAATTTAACCGAAGAGGAG
CAAATGCTGCAGGCCAAGTATCAGAAACTCAAGAAAAAGAAAAAGGCACT
GCAAGCGCACAAGGCGCCCAAGCCGGAGCCGGAGAGCTCCTTGACCTTGA
AGCGTCCCACGGATGCGCGAGATGCCCGTGAAGTGGCCAGGAAACTAATC
AAAAGCGGCGCCATTCCCGCCATCCAGAAGCAGACCAAGCAAGATCAAAC
CTCCTTCAAGCGGCCCAAAGACAAGAAAGAGCCAAGCGCTCCACCTCGGA
AACCACTGTTGCCTCCTACCAGCCCTTTTCGCCACGCAGAACAAGTGGC
UFO03845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nelf-E-RA | 1227 | CG5994-RA | 135..472 | 7..342 | 1610 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8600362..8600606 | 331..88 | 1160 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8600663..8600745 | 89..7 | 415 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4196..4280 | 303..218 | 111 | 63.2 | Minus |
UFO03845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:26 Download gff for
UFO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 126..475 | 1..349 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:14 Download gff for
UFO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 131..480 | 1..349 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:17 Download gff for
UFO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 131..480 | 1..349 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:17 Download gff for
UFO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8600342..8600604 | 90..349 | 97 | <- | Minus |
| 3L | 8600663..8600747 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:14 Download gff for
UFO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8593442..8593704 | 90..349 | 97 | <- | Minus |
| arm_3L | 8593763..8593847 | 1..89 | 95 | | Minus |
