UFO03846.5prime Sequence
860 bp (859 high quality bases) assembled on 2009-02-13
> UFO03846.5prime
CAGTCGACATGGCCGCTGGGACGACGACCAAGGAGCGCCTGGAGCGTCTG
ATTAACGCTAAAAAGCAGCTGGAGGCGCAGATCAACAGAAACGGACAGAT
CCTGGCCGCCAACGACAATGTGGGCATGAGTGGACCACTGGTGGACGCCG
AGGGTTTTCCGCGCAACGACATCGACGTTTACCAGGTGCGCCTAGCGCGA
CAGACGATCATCTGCCTGCAGAACGACCACAAGGAGCTGATGAACCAGAT
CCAGACGCTGCTCAACCAATATCACAGCGAGATTGCCACCACAGATCCGG
AGCTGGTGAACCGCGCCTCCGCTTTGGACCTGGACAGCGACCGTTCACCC
GGTGGCGCTAATATCACGGATCTTGCTCCTGCACGCGCCATCGTGGTGGT
CAATCTGGTCAGTCCCGATTCGCCCGCCGAAAGAGCTGGTCTCTGTGCCG
GCGATGCCATCCTCCGCTTTGGCTCCATCAATAGCGGCAACTTCAAGGGA
GATCTCGCCCAGATTGGCGAGCTGGTGCGCAACATGCAGAGCCAGAAATG
TCCAGCTGAAAGTGAAGCGCGGCGAGCAGCAGTTGGACCTCATCCTGGTG
CCGAAAACGTGGAGTGGACGCGGTCTCCTGGGCTGCAACATCGTCCTGCC
GCCCGAGGCGATGGATCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATATTCATAATCATAATCAC
AACTAGCCCTAGGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAA
TAAAAAACGCCCGGCGGCAACCGAGCGTCTGACCAATCCTGATGGAGTTC
TGAGGTCATT
UFO03846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9588-RA | 1226 | CG9588-RA | 152..812 | 8..669 | 3270 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13675800..13676127 | 438..111 | 1625 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13675506..13675736 | 669..438 | 1110 | 99.6 | Minus |
| 3R | 32079331 | 3R | 13676428..13676530 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:41 has no hits.
UFO03846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:41 Download gff for
UFO03846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 144..808 | 1..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:27 Download gff for
UFO03846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 148..812 | 1..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:40 Download gff for
UFO03846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 148..812 | 1..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:40 Download gff for
UFO03846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13675506..13675736 | 438..669 | 99 | <- | Minus |
| 3R | 13675801..13676127 | 111..437 | 99 | <- | Minus |
| 3R | 13676428..13676533 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:27 Download gff for
UFO03846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9501523..9501849 | 111..437 | 99 | <- | Minus |
| arm_3R | 9502150..9502255 | 1..110 | 96 | | Minus |
| arm_3R | 9501228..9501458 | 438..669 | 99 | <- | Minus |
