UFO03847.5prime Sequence
983 bp (975 high quality bases) assembled on 2009-02-13
> UFO03847.5prime
CAGTCGACATGGCTGTCATCACGGAACATGGCGGCACCACCTCCTCTCCC
CCGGAAAACAACAATAGCATCGGAAACGGAAAACACCGGGTCAATGGCCA
TCAGTTGAGCACCTCGCTGACCATACCGGAGTTCTTTGCCCACAAGAACA
TCTTTGTCACCGGCGGCACTGGATTCCTGGGCACCGTTCTTATCGAGGCT
CTGCTGGACACACATCCCGACATTGGAACCATCTACGTTTTGGTCCGGGG
CAAGCGCAAGTTTGATCCGAACGAGCGGATTCGTCGCCTGCTCCAAAAGC
CGATTTTCGAGAAATACTCGGAGAAGACTCTGTCCAAGGTGGTCCCAGTG
GTTGGCGAACTGAGCGAACCAAACTTTGGCTTTGGCCCCGAGCTCCTGCA
GGAGCTGATCGATCGGGTCAATGTGATCTACCACAGTGCAGCCACCATCA
AGTTCAGCTCCCCGCTGCGCACCGCCATTCGCACCAATCTCACGGGAACG
ATGCGCACCATTGAGCTGGCCAAACAATTGAAGCAACTGGCGGCGTACAT
CTATTGCTCCACGGCCTTCTGCAATAGCAACAATCGTGGTCTGATTGCCG
AGGAGGTGTACAAGTCACAGTTCGATCCGTACGAGATGATGAAGATGGCC
GAAGATGACTCCGCCTGGGAGGATTTCACCGATCAAAAGTGCAAGGGCTA
TATCCGTGATCATCCCAATACGTATACGTTCACCAAAGATCTGTCGGAGA
ATTTGCTGATGGCCGAGATGTCGGGACTGCCAGCAGCCATAGTTAGGCCA
TCGATTGTTATGGAACCCTGGAGCAACCCGATGAAGGGCTGGGTGGGCAA
TGCAACTCTAGATCACCTGGGCTTCTTGGCCGGCTTCGTGAAGGGAATTT
TTCCCACATGTGGCGGAATGCAATGCTGTGATCGACATCTTACCATGCGA
ACTATGTGATCAATCTCTCCACTGGCTATGGGC
UFO03847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1127 | 8..983 | 4550 | 98.2 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1151 | 8..983 | 4550 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 807..302 | 2500 | 99.6 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 302..8 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16596207..16596381 | 983..808 | 445 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:28 has no hits.
UFO03847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:40 Download gff for
UFO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1206 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:51 Download gff for
UFO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1151 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:34 Download gff for
UFO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1151 | 1..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:34 Download gff for
UFO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16596207..16596382 | 808..983 | 91 | <- | Minus |
| 2R | 16596436..16596940 | 303..807 | 99 | <- | Minus |
| 2R | 16597904..16598201 | 1..302 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:51 Download gff for
UFO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12483712..12483887 | 808..983 | 91 | <- | Minus |
| arm_2R | 12483941..12484445 | 303..807 | 99 | <- | Minus |
| arm_2R | 12485409..12485706 | 1..302 | 98 | | Minus |
