UFO03850.5prime Sequence
864 bp (864 high quality bases) assembled on 2009-02-13
> UFO03850.5prime
CAGTCGACATGTTTGGCCATCTCAGTTTGCTGGCCGCTCTGTTTTTCATC
GGCACATTGAAAGATTTCCGCGTTGCTGGGCTGAGACTGACCGAGGTTCG
CATTCCGATGTACGTGATTAAGGGTACCGCGGCGCAGTTGGAGTGTCTTT
ACGATCTGGATGGCGAGGCCCTCTACTCCGTGAAATGGTACAAGGATGGC
AACGAGTTCTACCGCTATGTGCCGAGGGATATGCCGCCTGCCCAAACGTT
CCTGCTGCCTGGTGTTAACGTCGATTTACACAACTCGAGCGACGCGATTG
TTACGCTGCGCAACGTCAATCTGCAGTCGGCGGGCCGCTTCCGGTGCGAA
GTTTCTGGTGAGGCACCCTCCTTCCAAACGGTCACCGAGCACGGCGACAT
GATTGTTGCGTATCTTCCGGACGAAGGATCACCGAAAATCAGCGGTGGAC
GACCGCGTTACCAAATCGGAGACTATGTTCGGGTTAATTGCACCGCAGGA
CGTTCCAAGCCTGCTGTGAAACTATCCTGGCAAGTGAATGGAGAGCCAGT
TGAGCAGCAGAAACTCCGCAAATACGACACAATTGTATCGGGACGAGATG
GTCTAGAAACTTCTGTGCTGGGCCTTCAATTCCGGGGTGGAACAGAAACA
CTTTCGCAAAGGCAACATGAAACTAAAGTGCATAGCCGAATTGTCGACCC
GTGTACTGGAGGTGCAACGAGGAGTCCCGTGGAGGGCGACCGGCCGCAGA
AGCGCCGGTGCTCGAGTCCCGGGAAAGGGTCTACGCCCAGCACTCACGCG
CCGATCCCGGTCTAGGTACGTCTTACCGGGAATTATTGTGACCAAAATCT
TATCGCTCTTGTTC
UFO03850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIc-RA | 1709 | CG15138-RA | 436..1292 | 7..864 | 4055 | 98.6 | Plus |
| beat-IIIc-RB | 3836 | CG15138-RB | 436..1236 | 7..809 | 3845 | 99 | Plus |
| beat-IIIb-RD | 3249 | CG33179-RD | 1254..1510 | 152..408 | 310 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17190834..17191099 | 678..412 | 1285 | 99.6 | Minus |
| 2L | 23513712 | 2L | 17196875..17197088 | 275..62 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 17193525..17193660 | 411..276 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 17190247..17190434 | 864..677 | 630 | 93.7 | Minus |
| 2L | 23513712 | 2L | 17251509..17251565 | 63..7 | 270 | 98.2 | Minus |
| 2L | 23513712 | 2L | 16984695..16984781 | 152..238 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:38 has no hits.
UFO03850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:23 Download gff for
UFO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 428..1290 | 1..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:06 Download gff for
UFO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 430..1292 | 1..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:04 Download gff for
UFO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIc-RA | 430..1292 | 1..864 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:04 Download gff for
UFO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17190834..17191099 | 412..678 | 99 | <- | Minus |
| 2L | 17193525..17193660 | 276..411 | 100 | <- | Minus |
| 2L | 17196875..17197086 | 64..275 | 100 | <- | Minus |
| 2L | 17251509..17251571 | 1..63 | 95 | | Minus |
| 2L | 17190247..17190432 | 679..864 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:06 Download gff for
UFO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17190247..17190432 | 679..864 | 94 | <- | Minus |
| arm_2L | 17190834..17191099 | 412..678 | 99 | <- | Minus |
| arm_2L | 17193525..17193660 | 276..411 | 100 | <- | Minus |
| arm_2L | 17196875..17197086 | 64..275 | 100 | <- | Minus |
| arm_2L | 17251509..17251571 | 1..63 | 95 | | Minus |
