UFO03857.5prime Sequence
816 bp (815 high quality bases) assembled on 2009-02-13
> UFO03857.5prime
CAGTCGACATGGCGACGGCAGTGCCGCATTGTCCCCCGAAACAGGACCTT
CCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTGCCACCGAA
GAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGTTGTGACAG
CCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGAAGCGCGAC
GAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATTTTGGTCGC
CGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCGGGACGAGG
AGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCACCTGGTAT
GGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTCACGCCCAT
TTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGCCAAGCGTG
CCCACTTGAAGCTCTGGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATTCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAATTCATT
AGCATTTCTGCCGACATGGAAGCCTTCACAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCACA
UFO03857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3446-RC | 1265 | CG3446-RC | 120..582 | 8..470 | 2315 | 100 | Plus |
| CG3446-RB | 713 | CG3446-RB | 120..582 | 8..470 | 2315 | 100 | Plus |
| CG3446-RA | 957 | CG3446-RA | 120..582 | 8..470 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6349699..6350057 | 470..112 | 1795 | 100 | Minus |
| X | 23542271 | X | 6350121..6350228 | 115..8 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:58:27 has no hits.
UFO03857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:21 Download gff for
UFO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 111..583 | 1..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:43 Download gff for
UFO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 113..585 | 1..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:30 Download gff for
UFO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 113..585 | 1..474 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:30 Download gff for
UFO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6349695..6350054 | 115..474 | 99 | <- | Minus |
| X | 6350122..6350234 | 1..114 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:43 Download gff for
UFO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6243728..6244087 | 115..474 | 99 | <- | Minus |
| arm_X | 6244155..6244267 | 1..114 | 97 | | Minus |
