UFO03858.5prime Sequence
1026 bp (978 high quality bases) assembled on 2009-02-13
> UFO03858.5prime
CAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCCTGGTGGGC
AATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACTCAGGGTCT
ATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCATGATTAAGA
CCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGGACACCGCC
GGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGATCGGCTCA
CGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATTTGACTGCC
TGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCAAGGTACTC
AAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAGATACCCAC
CCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTTCTTGGAGA
CATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACGAGATTGCC
GCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGTTCGGCCGC
AGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGGACTGGGGA
GCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGACTCGCCAGC
GGCGGCTCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATACTGGATCTATTAACAGGAGTCCAAGCGAGC
CTCGATTATCAAATTACGCCCCGCCCTGCCCACTTATCGCAAGTACTGTT
GTACTCCATTTACGCATTCTGCGACATGGCAGCCATCCACACACGCACAG
ACGAACCTGGATCGACCACCGCCCTC
UFO03858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab30-RD | 1305 | CG9100-RD | 435..1103 | 9..677 | 3345 | 100 | Plus |
| Rab30-RC | 2055 | CG9100-RC | 443..1111 | 9..677 | 3345 | 100 | Plus |
| Rab30-RB | 1970 | CG9100-RB | 358..1026 | 9..677 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7031437..7032105 | 677..9 | 3345 | 100 | Minus |
| X | 23542271 | X | 20252273..20252324 | 165..216 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:18 has no hits.
UFO03858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:26 Download gff for
UFO03858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RC | 424..1105 | 1..683 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:16 Download gff for
UFO03858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 1..683 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:58 Download gff for
UFO03858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 1..683 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:58 Download gff for
UFO03858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7031432..7032113 | 1..683 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:16 Download gff for
UFO03858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7031432..7032113 | 1..683 | 98 | | Minus |
