UFO03859.5prime Sequence
853 bp (793 high quality bases) assembled on 2009-02-13
> UFO03859.5prime
CAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAGTCCAGGGC
CAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGGACGAACCT
CAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCCGGTGGATG
TGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTCTCACGATT
CCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTCATTGCGGA
GCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCCCAACGAGG
AGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAGCCATTAGG
ACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCAGGGCAGGT
AAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGATTTGGTGA
AGGACGAACTAATCCAACGACACGCACTTCCGCCCGATTCCTACATTCCC
AGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAGAGGGGCAC
ACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGCCTGGGGTT
ATGGTCTATCGTGTTTGACTCCCTGACGGGACGATCCTGGCGCATAGAGC
AGAGTCCATGAAGCCGTCGCCCTTTGCTGAAATTAGGACGCTCCAGCAAC
TCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGAAGTGTAAGA
CCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGATGAGGGTTC
CGCTCTCCCTGATCATCAACGAGACTTCGGGAAGTCTGCGATTGCCAGCA
GGG
UFO03859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e3-RA | 1319 | CG17045-RA | 64..911 | 8..853 | 4055 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13404001..13404394 | 749..357 | 1780 | 98.5 | Minus |
| 3R | 32079331 | 3R | 13404459..13404807 | 356..8 | 1745 | 100 | Minus |
| 3R | 32079331 | 3R | 13403831..13403937 | 853..748 | 440 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:17 has no hits.
UFO03859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:25 Download gff for
UFO03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 56..909 | 1..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:51 Download gff for
UFO03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 58..911 | 1..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:51 Download gff for
UFO03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 58..911 | 1..853 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:51 Download gff for
UFO03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13404001..13404394 | 357..749 | 98 | <- | Minus |
| 3R | 13404459..13404810 | 1..356 | 98 | | Minus |
| 3R | 13403831..13403935 | 750..853 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:51 Download gff for
UFO03859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9229553..9229657 | 750..853 | 96 | <- | Minus |
| arm_3R | 9229723..9230116 | 357..749 | 98 | <- | Minus |
| arm_3R | 9230181..9230532 | 1..356 | 98 | | Minus |
