UFO03860.5prime Sequence
1149 bp (965 high quality bases) assembled on 2009-02-13
> UFO03860.5prime
CAGTCGACATGTCCATCCAGAATTTAAACACTCGTGACCCCTTTGCTGAT
GCAATCAAGGGCAATGATGATGATATTCAAGACGGGCTAGTGCATATAAG
AATCCAGCAGAGGAACGGTCGCAAGACGCTAACCACTGTCCAGGGCCTGT
CCGCGGAGTATGACTTGAAGAAGATAGTCCGCTCCTGCAAGAAGGAATTC
GCATGCAATGGCACTGTAATCGAGCACCCAGAGTATGGTGAGGTTCTGCA
GCTCCAGGGCGATCAGCGTGAGAACATCTGTCAATGGTTGACGAAGGTGG
GTCTAGCTAAGCCGGATCAGCTGAAGGTGCACGGCTTCGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAAACATATTCTCAATAAATCCTTTAGGGAAATAGGGCCAGGTTTTC
ACCGTAACACGCCACATCTTGCGAATATATTGTTTAGAAACTGCCGGAAA
ATCCGTCGTGGTTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTTGCT
CAATGGAAAACGGTGTAACAAGGGTGAACACTTATTCCATATCACCAGCT
CCACGTTCTTTCTTTGGCATATCGAAAATTCCGGAATGACATTCATCAGG
GCGGGCAAGAAATGGTGAATAAAGGCTCGAATAAACCTTGGGGTCTTAAT
TCCATTTATCAGGTCTTATAAAAAGGGCTTAAAATCTCCGCTGAAAGCG
UFO03860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17737-RA | 681 | CG17737-RA | 159..488 | 9..338 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3223769..3223928 | 36..195 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 3224312..3224457 | 193..338 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:13 has no hits.
UFO03860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:24 Download gff for
UFO03860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17737-RA | 143..488 | 1..348 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:06 Download gff for
UFO03860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17737-RA | 152..497 | 1..348 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:11 Download gff for
UFO03860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17737-RA | 152..497 | 1..348 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:11 Download gff for
UFO03860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3223770..3223927 | 37..194 | 100 | -> | Plus |
| 3L | 3224314..3224457 | 195..338 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:06 Download gff for
UFO03860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3223770..3223927 | 37..194 | 100 | -> | Plus |
| arm_3L | 3224314..3224457 | 195..338 | 100 | == | Plus |
