UFO03862.5prime Sequence
989 bp (989 high quality bases) assembled on 2009-02-13
> UFO03862.5prime
CAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACCGCTTGGCA
CCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCGCGTCAGAT
GGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGAGATTCCCG
ACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGATGGTCGGC
GGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAATCTCACCTG
CGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTGTATGCCCT
TCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGCTCGTTTTG
AGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATGGGAATGGC
TATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCTCTGGTATA
TGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCTCCATGTGT
CTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGCCACACCAT
CTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACATCTACGTTT
GCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTGTGAGGCGG
TGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTGCCCAGATT
CTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGGCAGCCCAA
CGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATTACTTTGGA
GTGAACCTATACTACACAAGCTTACTATCTGTTCCGGGTGCTGTTCGTCC
ACCTGCTGCCCTGCATTATCCTGTTACCCTGACATTCTGCTGTTCGCGGC
GATGCGGCAGGCACAGACGCCGAAAGCTCTCTTTTCGGGAAAACCGAAGA
AGGAGTGCAGAAAACTGAAGGGAGACCATTGCCCCCCCT
UFO03862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPR-RB | 3357 | CG16752-RB | 295..1271 | 5..978 | 4570 | 98.4 | Plus |
| SPR-RC | 2804 | CG16752-RC | 214..1190 | 5..978 | 4570 | 98.4 | Plus |
| SPR-RA | 3093 | CG16752-RA | 503..1479 | 5..978 | 4570 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5478767..5479156 | 5..394 | 1935 | 99.7 | Plus |
| X | 23542271 | X | 5491530..5491917 | 585..968 | 1530 | 95.9 | Plus |
| X | 23542271 | X | 5480832..5480967 | 393..528 | 665 | 99.3 | Plus |
| X | 23542271 | X | 5487372..5487435 | 523..586 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:35 has no hits.
UFO03862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:17 Download gff for
UFO03862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 496..1482 | 1..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:03 Download gff for
UFO03862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 501..1487 | 1..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:01 Download gff for
UFO03862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 501..1487 | 1..985 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:01 Download gff for
UFO03862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5478765..5479155 | 1..393 | 99 | -> | Plus |
| X | 5480833..5480963 | 394..524 | 100 | -> | Plus |
| X | 5487374..5487435 | 525..586 | 100 | -> | Plus |
| X | 5491532..5491934 | 587..985 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:03 Download gff for
UFO03862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5372798..5373188 | 1..393 | 99 | -> | Plus |
| arm_X | 5374866..5374996 | 394..524 | 100 | -> | Plus |
| arm_X | 5381407..5381468 | 525..586 | 100 | -> | Plus |
| arm_X | 5385565..5385967 | 587..985 | 95 | | Plus |
