UFO03873.5prime Sequence
975 bp (929 high quality bases) assembled on 2009-02-13
> UFO03873.5prime
CAGTCGACATGTCGAACAAAATTGAAGTCTCGCTTCCGGAGGAGGAACTG
GATTGGATACAATTGCGCCAGGACCTGGGACCCGTTGCCGAGGTGGAAAC
GACCAAGGAGAAGTTGCAGCGCAAGATCAAGGAGAATCCGCTGGTTCCGT
TGGGATGTTTGGCCACTACAGCGGCGCTCACAGCTGGCTTATACAACTTT
CGCACTGGCAATCGCAAGATGTCGCAGCTGATGATGCGAAGTCGTATCGC
GGCTCAGGGATTTACCGTTATGGCCCTAGTTGTCGGCGTCGTCATGACCT
ACACTGATAAAAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAAACTCACCCAGGGATGGGCTGAGACGAAAACATATTCTCAATAAACCC
TTTAGGAAATAGGCAGGTTTTCACCGTAACACGCCACATCTTGCCGATTA
TATGTGTAGAAACTGCCGGACATCGTCGTGGTATTCACTCCAGAGCGATG
AAACGTTTCAGTTTGTTCATGAAAACGGTGTACCAGGTTGAACATATCCC
ATATCCCATCTCACCGTCTTTCTTG
UFO03873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9921-RC | 985 | CG9921-RC | 392..701 | 5..314 | 1535 | 99.7 | Plus |
| CG9921-RB | 685 | CG9921-RB | 92..401 | 5..314 | 1535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16331565..16331726 | 314..153 | 810 | 100 | Minus |
| X | 23542271 | X | 16331808..16331957 | 154..5 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:00 has no hits.
UFO03873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:12 Download gff for
UFO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RA | 189..506 | 1..321 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:06 Download gff for
UFO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 89..406 | 1..321 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:35 Download gff for
UFO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9921-RB | 89..406 | 1..321 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:35 Download gff for
UFO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16331565..16331725 | 154..314 | 100 | <- | Minus |
| X | 16331809..16331959 | 1..153 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:06 Download gff for
UFO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16225598..16225758 | 154..314 | 100 | <- | Minus |
| arm_X | 16225842..16225992 | 1..153 | 98 | | Minus |
