UFO03878.5prime Sequence
1100 bp (992 high quality bases) assembled on 2009-02-13
> UFO03878.5prime
CAGTCGACATGGCGGATGTCCTGGAGAAAAGCTCACTGCTGGATGCTGTG
CCACCACTAGGCGACCCCCACCCACCGCTGCCCCACCAGCAGCTGCAACA
GGAAGCAGCAGCAGCAGCAGCAGCAAATGCCGCACCACCAGCACCACCGC
AGCAGCAACAACCACCACCCCATCAGCTGCAGCAGCAGCAGCCGCAACAA
CAGCAACTGCAACAGAAGCCAGCAAATGCGAGGGCTAATCAGGATCAAAA
AGAGGGCGACAATGACAGCGGCGTGGATGAGTCCACTCAGGAGAAGGATC
GCAACGGACCCAACTCGCCCAGTTCGCCCGTAAAAACGCCCACATCGACC
TCATCGAAGCCGGACAAGTCGGGCACGTCGCGTCCACCGAGTGCCACGCC
CTCGAACAAGTCAGCCCCCAAATCGCGCAGCGCCTCCAAGAACCGCTTGC
TCCTCAAGACCCCAGAGCCCGAGCCAGTGAAGAAAGTTCCAATGAACAAG
GTACAAGTCGGACATGCGCCTTCACCCAATCTGAAGGCGGTACGCTCCAA
GATCGGATCCCTGGACAATGCCACCTATAAGCCGGGTGGCGGCCACGTGA
AAATCGAGTCCAAGAAGATCGACATCAAGGCGGCACCGCGCATCGAGGCC
AAGAACGACAAGTACATGCCAAAGGGCGGCGAGAAGAAGATAGTTACAAC
AAAGTTGCAGTGGAACGCCAAGTCCAAAATCGGTTCGCTGGAGAATGCCG
CCCACAAGCCGGGAGGCGGGGACAAGAAGATCGAGACCCTGAAGATGGAC
TTCAAGGACAAGGCCAAGCCGAATGTGGGCTCGACGGCCAATGTGAAACA
TCAGCCGGGTGGCGGAGACATCAAGATCCAAACGCAAAACTAGAATTAAG
CACAAAGCAAGTTGGCTCTTTGGATATGTAAAGCACCAGCCCCGTGGCGT
GAGAGAGATTTTCGATGATAGATTATTTGGAAAATTGTTGAACCCTTTTG
TTGCACTGACACACCCACAACACAGAGTTCACTAACATCCATGAACGGCT
TCTGCGCCTGATGAAATTAAATCCACCAAAGCGCAAGTTTTCTGAACATT
UFO03878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tau-RB | 2425 | CG45110-RB | 548..1630 | 9..1082 | 4820 | 97.2 | Plus |
| tau-RA | 2243 | CG45110-RA | 366..1448 | 9..1082 | 4820 | 97.2 | Plus |
| tau-RF | 1802 | CG45110-RF | 366..1391 | 9..1025 | 4705 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27656206..27656449 | 252..9 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 27646041..27646245 | 689..485 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 27646336..27646527 | 486..295 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 27645225..27645412 | 875..688 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27647564..27647610 | 297..251 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:19 has no hits.
UFO03878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:10 Download gff for
UFO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 354..1444 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:17 Download gff for
UFO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 358..1448 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:20 Download gff for
UFO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 358..1448 | 1..1082 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:20 Download gff for
UFO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27645225..27645410 | 690..875 | 99 | <- | Minus |
| 3R | 27646041..27646243 | 487..689 | 100 | <- | Minus |
| 3R | 27646336..27646525 | 297..486 | 100 | <- | Minus |
| 3R | 27647565..27647608 | 253..296 | 100 | <- | Minus |
| 3R | 27656206..27656457 | 1..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:17 Download gff for
UFO03878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23470947..23471132 | 690..875 | 99 | <- | Minus |
| arm_3R | 23471763..23471965 | 487..689 | 100 | <- | Minus |
| arm_3R | 23472058..23472247 | 297..486 | 100 | <- | Minus |
| arm_3R | 23473287..23473330 | 253..296 | 100 | <- | Minus |
| arm_3R | 23481928..23482179 | 1..252 | 98 | | Minus |
