UFO03880.5prime Sequence
1063 bp (1024 high quality bases) assembled on 2009-02-13
> UFO03880.5prime
CAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACAAGGAAATG
CGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACGATTCTGTA
CAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGTGGGCTTTA
ATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGTGGGACGTC
GGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTACACGGGTAC
ACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCGGATAGACG
AGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGATGCGCGAC
GCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGATGCAATGAA
ACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAGAGATCGCA
ATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCCTGTCCGAG
GGCCTCATTTGGTTAACGTCGAACCATAAGTTAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAATCAAACTGGTGAACTCACCCAGGGATGGGCTGAAACGAAAAACA
TATTCTCAATAAACCTTAGGGAAATAGGCAGGTTCTACGGTAACCACACA
TCTGGCGAAAATA
UFO03880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 8..533 | 2630 | 100 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 8..533 | 2630 | 100 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 8..533 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 87..393 | 1520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 393..533 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 8..90 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 136..33 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 70..276 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:56 has no hits.
UFO03880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:09 Download gff for
UFO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RD | 286..817 | 1..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:20 Download gff for
UFO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 288..819 | 1..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:57 Download gff for
UFO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 288..819 | 1..533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:57 Download gff for
UFO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323477..15323565 | 1..90 | 96 | -> | Plus |
| 2R | 15323845..15324147 | 91..393 | 100 | -> | Plus |
| 2R | 15324202..15324341 | 394..533 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:20 Download gff for
UFO03880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210982..11211070 | 1..90 | 96 | -> | Plus |
| arm_2R | 11211350..11211652 | 91..393 | 100 | -> | Plus |
| arm_2R | 11211707..11211846 | 394..533 | 100 | == | Plus |
