Clone UFO03882 Report

Search the DGRC for UFO03882

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:38
Well:82
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5585-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03882.5prime Sequence

1088 bp (983 high quality bases) assembled on 2009-02-13

> UFO03882.5prime
CAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAAACTACCCA
GAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTGACGTGTGC
CTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGATGGCCGCA
TTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTATTTCGGCC
CATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGTCACAAGTT
ACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGTGCTAACCG
GCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGAAAGTACAG
TTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATGCGATATGC
CGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCCCTTGGATT
CCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAGGCAAACAC
ATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGATGTTGAAAC
CTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTCAAGTGCAA
CGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCATTTCTAATC
AACACCTCAGATCGAGTTATTCGTGTTTACGACTCAAAAGAAATAATCAC
TCTAGGCAAAGACGGCGAACCGGACCCTATACAAAGCTACAGGACTTGGT
CAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATGGGGAGTACA
TTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTACATATGGGAAAAGTCT
ATTGGAAACCTGGTGAGATCCTGCATGGCACCAAAGGTGAGCTGCTCTTG
GACGTGTTGTGCATCCTGTGCGGCTATTATTGCCAGCATTAGCTTCGGAC
TGTATCCATTTGGGTCAAAATCAGTTGAAAACTGGCCTGCCTTGCACCAA
TTTCAAGGAATACACGAAACGTAAGGACAAGACGGGAATCGAGTTTCCAC
TTGCGGACAAGACCAGTCTGTGAATCTGGATGGCAACC

UFO03882.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1853 CG5585-RA 34..1123 9..1082 4795 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20347613..20347835 248..26 1115 100 Minus
3L 28110227 3L 20347351..20347560 456..247 1050 100 Minus
3L 28110227 3L 20347108..20347289 637..456 910 100 Minus
3L 28110227 3L 20322877..20323058 637..456 895 99.5 Minus
3L 28110227 3L 20346633..20346875 993..757 825 95.1 Minus
3L 28110227 3L 20322505..20322644 895..757 635 98.6 Minus
3L 28110227 3L 20346935..20347054 756..638 535 98.3 Minus
3L 28110227 3L 20322704..20322823 756..638 520 97.5 Minus
3L 28110227 3L 20323120..20323202 456..374 370 96.4 Minus
Blast to na_te.dros performed on 2014-11-28 23:09:19 has no hits.

UFO03882.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:14 Download gff for UFO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 31..1062 9..1028 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:45 Download gff for UFO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1065 9..1028 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:29 Download gff for UFO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1065 9..1028 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:29 Download gff for UFO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20346593..20346875 757..1028 93 <- Minus
3L 20346935..20347054 638..756 98 <- Minus
3L 20347108..20347289 456..637 100 <- Minus
3L 20347352..20347558 249..455 100 <- Minus
3L 20347613..20347833 28..248 100 <- Minus
3L 20347891..20347909 9..27 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:45 Download gff for UFO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20339693..20339975 757..1028 93 <- Minus
arm_3L 20340035..20340154 638..756 98 <- Minus
arm_3L 20340208..20340389 456..637 100 <- Minus
arm_3L 20340452..20340658 249..455 100 <- Minus
arm_3L 20340713..20340933 28..248 100 <- Minus
arm_3L 20340991..20341009 9..27 100   Minus