UFO03882.5prime Sequence
1088 bp (983 high quality bases) assembled on 2009-02-13
> UFO03882.5prime
CAGTCGACATGAATTTGGAGCTACTAGAATCTTTCGGACAAAACTACCCA
GAGGAGTTCGACGGCTCGCTGGATTGCATTTCGTTGGCCGTGACGTGTGC
CTTTAACAAATACGGAACCCTTTTGGCCGTGGGATGCAATGATGGCCGCA
TTGTAATCTGGGATTTTCTGACGAGGGGCATTGCCAAGATTATTTCGGCC
CATGTGCATCCCGTTTGCAGTCTCAGTTGGACCAGGAATGGTCACAAGTT
ACTTTCAGCTTCCACGGACAACAATGTGTGCATTTGGGATGTGCTAACCG
GCGAACTGGAACACAAGTATAGGTTTCCATCGCCTGTGCTGAAAGTACAG
TTCGATCCCCGAAATGACAACCGACTTTTGGTGTGCCCCATGCGATATGC
CGCCGTTCTTGTAGAGGTCGGCGGAACTCACCGCTGCCTGCCCTTGGATT
CCGATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAGGCAAACAC
ATCTACACAGGCAACGCCAAGGGAAAAATACTCGTACTGGATGTTGAAAC
CTTTGAGGTGGTCGCCAGTTTTCGCATTATTGTAGGCACCTCAAGTGCAA
CGGCTGTAAAAAGCATCGAGTTTGCGAGGCGTGGAGACGCATTTCTAATC
AACACCTCAGATCGAGTTATTCGTGTTTACGACTCAAAAGAAATAATCAC
TCTAGGCAAAGACGGCGAACCGGACCCTATACAAAGCTACAGGACTTGGT
CAATAAAACCACCTGGAAAAAGTGCTGCTTCTCCGGTGATGGGGAGTACA
TTTGCGCTGGCAGTGCTCGCCAGCATGCTCTTTACATATGGGAAAAGTCT
ATTGGAAACCTGGTGAGATCCTGCATGGCACCAAAGGTGAGCTGCTCTTG
GACGTGTTGTGCATCCTGTGCGGCTATTATTGCCAGCATTAGCTTCGGAC
TGTATCCATTTGGGTCAAAATCAGTTGAAAACTGGCCTGCCTTGCACCAA
TTTCAAGGAATACACGAAACGTAAGGACAAGACGGGAATCGAGTTTCCAC
TTGCGGACAAGACCAGTCTGTGAATCTGGATGGCAACC
UFO03882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1853 | CG5585-RA | 34..1123 | 9..1082 | 4795 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20347613..20347835 | 248..26 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 20347351..20347560 | 456..247 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 20347108..20347289 | 637..456 | 910 | 100 | Minus |
3L | 28110227 | 3L | 20322877..20323058 | 637..456 | 895 | 99.5 | Minus |
3L | 28110227 | 3L | 20346633..20346875 | 993..757 | 825 | 95.1 | Minus |
3L | 28110227 | 3L | 20322505..20322644 | 895..757 | 635 | 98.6 | Minus |
3L | 28110227 | 3L | 20346935..20347054 | 756..638 | 535 | 98.3 | Minus |
3L | 28110227 | 3L | 20322704..20322823 | 756..638 | 520 | 97.5 | Minus |
3L | 28110227 | 3L | 20323120..20323202 | 456..374 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:19 has no hits.
UFO03882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:14 Download gff for
UFO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-RA | 31..1062 | 9..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:45 Download gff for
UFO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1065 | 9..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:29 Download gff for
UFO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1065 | 9..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:29 Download gff for
UFO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20346593..20346875 | 757..1028 | 93 | <- | Minus |
3L | 20346935..20347054 | 638..756 | 98 | <- | Minus |
3L | 20347108..20347289 | 456..637 | 100 | <- | Minus |
3L | 20347352..20347558 | 249..455 | 100 | <- | Minus |
3L | 20347613..20347833 | 28..248 | 100 | <- | Minus |
3L | 20347891..20347909 | 9..27 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:45 Download gff for
UFO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20339693..20339975 | 757..1028 | 93 | <- | Minus |
arm_3L | 20340035..20340154 | 638..756 | 98 | <- | Minus |
arm_3L | 20340208..20340389 | 456..637 | 100 | <- | Minus |
arm_3L | 20340452..20340658 | 249..455 | 100 | <- | Minus |
arm_3L | 20340713..20340933 | 28..248 | 100 | <- | Minus |
arm_3L | 20340991..20341009 | 9..27 | 100 | | Minus |