UFO03884.5prime Sequence
1093 bp (965 high quality bases) assembled on 2009-02-13
> UFO03884.5prime
CAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGGATCCCTTC
GCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATTGTGATTAC
GGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAATCAAATCA
AGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTGGCTTCGAA
ATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTCGCCTGCCG
CAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACGTGAGCTGG
GCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATCCGGAGGAC
AGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTGCGCAGTGT
CCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGATCGATGTGC
TGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGCCCACCGAG
GATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCCTTCCTGTT
GACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGGACGCATCC
TCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAAATCGATTTCGACGA
TCCCCTGAATGTGGGCACCTGGTCGGTGAAGTTCCACGCCCGCGAAGCAT
TTGCCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGATGGCCAA
GGGAAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCCAGGAC
TCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCCCTC
TGCGTGAAGGCGGTCACCTATCCGTGGATGTGGCTGTCATGAAGATGCCT
ACGAGGGCGCCCAATGCGCCATCGCTTGGCCACCGATCCCCAGCTGAAGG
AAGTCCACCGGCGAGTACTTCATGGATGCAAATTGCCGACAAGTTCGGTG
AACGGGCAAAACATGAGATGTGCCCAAATAAGCTGTATTATGCAAAACTT
AAAATCCTCTTAAACGTGTTATCCAGTCCTACCATTCACATAG
UFO03884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31235-RB | 2494 | CG31235-RB | 125..1165 | 9..1054 | 4655 | 97.2 | Plus |
| CG31235-RA | 1564 | CG31235-RA | 125..1165 | 9..1054 | 4655 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18326003..18326659 | 766..106 | 3125 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18317616..18317765 | 972..825 | 525 | 96 | Minus |
| 3R | 32079331 | 3R | 18328720..18328818 | 107..9 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 18325478..18325543 | 828..762 | 285 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:55 has no hits.
UFO03884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:59:13 Download gff for
UFO03884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 113..1128 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for
UFO03884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 116..1131 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:19 Download gff for
UFO03884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 116..1131 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:19 Download gff for
UFO03884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18317611..18317761 | 829..974 | 94 | <- | Minus |
| 3R | 18325478..18325541 | 764..828 | 98 | <- | Minus |
| 3R | 18326006..18326658 | 107..763 | 99 | <- | Minus |
| 3R | 18328721..18328827 | 1..106 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for
UFO03884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14143333..14143483 | 829..974 | 94 | <- | Minus |
| arm_3R | 14151200..14151263 | 764..828 | 98 | <- | Minus |
| arm_3R | 14151728..14152380 | 107..763 | 99 | <- | Minus |
| arm_3R | 14154443..14154549 | 1..106 | 96 | | Minus |
