UFO03885.5prime Sequence
773 bp (771 high quality bases) assembled on 2009-02-13
> UFO03885.5prime
CAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGATTTCTATGC
CGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTATAGTGATCA
TGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCTACCAATTA
CAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAATCATGTCTG
CATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACGCGGATGCG
GGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAGAAATCCCT
CGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAAGCTCGGTT
CACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGCCGCAGCGA
GTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGAATCCCAAT
CCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCAGCGAAAGC
CACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAAGAGACTGG
CACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAACCCATGCAG
ATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGGC
ACCGAGCGTTCTGAACAATCCAG
UFO03885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31109-RB | 978 | CG31109-RB | 155..748 | 9..602 | 2970 | 100 | Plus |
| CG31109-RA | 870 | CG31109-RA | 155..748 | 9..602 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25053599..25053869 | 602..332 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 25054356..25054499 | 152..9 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 25054042..25054179 | 290..153 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 25053933..25053974 | 332..291 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:16 has no hits.
UFO03885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:51 Download gff for
UFO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 128..732 | 1..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:08 Download gff for
UFO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 147..751 | 1..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:13 Download gff for
UFO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 147..751 | 1..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:13 Download gff for
UFO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25053596..25053868 | 333..606 | 99 | <- | Minus |
| 3R | 25053933..25053974 | 291..332 | 100 | <- | Minus |
| 3R | 25054042..25054179 | 153..290 | 100 | <- | Minus |
| 3R | 25054356..25054507 | 1..152 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:08 Download gff for
UFO03885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20879764..20879901 | 153..290 | 100 | <- | Minus |
| arm_3R | 20879318..20879590 | 333..606 | 99 | <- | Minus |
| arm_3R | 20879655..20879696 | 291..332 | 100 | <- | Minus |
| arm_3R | 20880078..20880229 | 1..152 | 98 | | Minus |
