UFO03888.5prime Sequence
1064 bp (986 high quality bases) assembled on 2009-02-13
> UFO03888.5prime
CAGTCGACATGTCATACAAGGTTGAAGCTGTTCCCGATTCCTACGCCGCC
CTGGGCGAGGGACCCCACTGGGATGTTGATCGCCAGAGTCTGTACTACGT
GGACCTCGAATCCGCCGGCATTAATCGTTATGATTTCAAGCAGAACAAAG
TGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCATTCTGCCG
GTTGAGAACAAACCGCAGGAGTTTGCCGTAGGATGCGGTCTTCGTACGGT
CATCGTCCAGTGGGATGGAGTCTCCGCAGTGGCCAAGGTCACTCGCACCC
TGTTCGAGGTGCAGCCGGACCTGAAGGAAAACCGCCTTAATGATGCCAAA
ACCGATCCCAATGGCCGTTTTTACGGTGGCACCATGGCCGACAGTGGCGA
CATATTCACCCAATGGAAGGGTGAGCTCTACAGCTGGCAGGCCGGTGGAC
AGCCCAACGCTATCCGTAGCAAGGTGGGCATATCCAATGGCCTGGCCTGG
GATGTCAAGGCCAAGAAGTTCTACTTCATCGACACCAACAACCACGAGGT
ATTGGCCTATGACTACAATCAGAGCACCGGCGCCGTAAGCAACCCAAAGG
TCATCTTCGATCTGAGGAAGATTCGGCCCGAAGGACCATTGTTCCCTGAT
GGCATGACCGTAGACACCGATGGCATATCTACGTGGCCACCTTCAATGGT
GGCACCGTCTTCAAGGTCAATCCAAGCACCGGTAAATTCTGCTGGAGATC
AAAATTCCAACCACCCAAATCACCTCGGTGGCTTTTGGAGGTCCCAAATT
TGGATATTTTGTATGTGACAACCGCCAACAAGTTCGACCAGCAAAACAAG
CTGGTTACCACCTTCCAGGTCACTGGGCTCAATGCCAGGGTTACGCCGGC
GTTAATTTGAGATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
AGGTAAGTGTCATAATCATATTCATAATCATATCATAAACACACCTAGCT
AGGAGATCTGGTCATGACTATGTGGCTTGGATTCTCACAATAAAAAACGC
CCCGGGGGCAACCG
UFO03888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smp-30-RD | 1297 | CG7390-RD | 322..1225 | 9..910 | 4365 | 99.2 | Plus |
| smp-30-RC | 1102 | CG7390-RC | 127..1030 | 9..910 | 4365 | 99.2 | Plus |
| smp-30-RB | 1219 | CG7390-RB | 53..956 | 9..910 | 4365 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14746407..14747125 | 726..9 | 3545 | 99.9 | Minus |
| 3R | 32079331 | 3R | 14746164..14746340 | 910..734 | 680 | 97.2 | Minus |
| X | 23542271 | X | 12016003..12016718 | 9..723 | 425 | 70.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:03 has no hits.
UFO03888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:50 Download gff for
UFO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 49..963 | 9..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:17 Download gff for
UFO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 53..967 | 9..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:15 Download gff for
UFO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 53..967 | 9..922 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:15 Download gff for
UFO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14746153..14746348 | 727..922 | 94 | <- | Minus |
| 3R | 14746407..14747133 | 1..726 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:17 Download gff for
UFO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10571875..10572070 | 727..922 | 94 | <- | Minus |
| arm_3R | 10572129..10572855 | 1..726 | 99 | | Minus |
