UFO03890.5prime Sequence
1081 bp (1015 high quality bases) assembled on 2009-02-13
> UFO03890.5prime
CAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGCCCAAGGCC
GCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAGGCCGAGAA
GCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAAGCGTCACG
GACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTGGTCTGAGG
AACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCCCGCCGCAA
GGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGTCTACAAGG
CCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGACCCGCGTC
CGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACCGGCGCTGT
GCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGGCCACCGCA
TCCGCATCATGCTGTACCCATCAAGGATTGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAA
ATCAAACTGGTGAACTCACCCAGGGATTGGCTGAACGAAACATATTCTCA
TAACCCTTTAGGGAATAGCCAGTTTCACGTACCCGCCACATCTTGCCGAT
TTATGTGTAGAACTGCGAATCGGTCTGCATTCACTTCGACCATGAAACCG
TTCCATGCCTCATGGGAAAAGGTGTACAGTT
UFO03890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL35A-RA | 621 | CG2099-RA | 69..540 | 8..479 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5465800..5466029 | 458..229 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 5466153..5466375 | 230..8 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:18 has no hits.
UFO03890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:48 Download gff for
UFO03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35A-RA | 61..546 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:04 Download gff for
UFO03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35A-RA | 65..550 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:59 Download gff for
UFO03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL35A-RA | 65..550 | 1..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:59 Download gff for
UFO03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5465711..5465731 | 459..479 | 100 | <- | Minus |
| 3R | 5465800..5466027 | 231..458 | 100 | <- | Minus |
| 3R | 5466153..5466378 | 1..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:04 Download gff for
UFO03890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1291433..1291453 | 459..479 | 100 | <- | Minus |
| arm_3R | 1291522..1291749 | 231..458 | 100 | <- | Minus |
| arm_3R | 1291875..1292100 | 1..230 | 98 | | Minus |
