UFO03891.5prime Sequence
1119 bp (1002 high quality bases) assembled on 2009-02-13
> UFO03891.5prime
CAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAGCCGGCGAC
TTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGATACGGGACA
TCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTTTCCAGCCA
GATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGGAGCTCGTC
GAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCGGCAGTGCG
ACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGACGGGGCTC
CACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCTACCGCTAC
ACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCCGGCATTCA
CGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCGCAACGTGG
GATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCGATGCCCCG
CTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTTGAACTGCC
CGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGAGCCCGGCG
ATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGCGGGCAGAA
CTCACATTTACCATCAACAACATGGTGATAACCCATGTGGACACCGAGTA
CATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCTGAAGATGC
AATTGCACGGCATTCACTTTTCCAGCGTGAATCCGGCCATCTACAATAAC
GTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGGTTTATGCCC
CGAAATCGAATCCTGCGGATTACTTTTGCGCTGCTCGGCGCAAATCGGGA
TCTATACCAGAGTACAAGGAAATCGAGCTGGCACTCCGCCAAAGGATCCG
TTACCGGCACGTGTCACGCTCTTCATCCGACACAGCTTGAGAACTTTTCA
GCTCGTATTTCCTCGAACTCGGCATCGCGCACCCGACTCTCTGCCCGGCG
CTACATGGGGCCATTAAATATGCCATGCTGCTAGTTAATCGGGCCTATTA
AGGCTGTCATTGGAGCCCT
UFO03891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIa-RB | 2829 | CG14334-RB | 747..1871 | 4..1119 | 4890 | 96.7 | Plus |
| beat-IIa-RA | 2984 | CG14334-RA | 902..2026 | 4..1119 | 4890 | 96.7 | Plus |
| beat-IIb-RC | 2442 | CG4135-RC | 1036..1418 | 240..622 | 420 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17321216..17321505 | 963..677 | 1145 | 96.9 | Minus |
| 3R | 32079331 | 3R | 17332490..17332710 | 412..192 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 17345399..17345587 | 192..4 | 930 | 99.5 | Minus |
| 3R | 32079331 | 3R | 17331018..17331153 | 543..408 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17327233..17327367 | 677..543 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 17239703..17239860 | 397..240 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:12 has no hits.
UFO03891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:47 Download gff for
UFO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 897..1929 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:00 Download gff for
UFO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 899..1931 | 1..1030 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:55 Download gff for
UFO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 899..1931 | 1..1030 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:55 Download gff for
UFO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17321216..17321504 | 678..963 | 96 | <- | Minus |
| 3R | 17327233..17327366 | 544..677 | 100 | <- | Minus |
| 3R | 17331018..17331153 | 408..543 | 100 | <- | Minus |
| 3R | 17332495..17332709 | 193..407 | 100 | <- | Minus |
| 3R | 17345399..17345588 | 1..192 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:00 Download gff for
UFO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13146938..13147226 | 678..963 | 96 | <- | Minus |
| arm_3R | 13152955..13153088 | 544..677 | 100 | <- | Minus |
| arm_3R | 13156740..13156875 | 408..543 | 100 | <- | Minus |
| arm_3R | 13158217..13158431 | 193..407 | 100 | <- | Minus |
| arm_3R | 13171121..13171310 | 1..192 | 98 | | Minus |
