UFO03894.5prime Sequence
1038 bp (974 high quality bases) assembled on 2009-02-13
> UFO03894.5prime
CAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGCTGCGTGGT
CATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAGCATCCCGG
AGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAACTTCGACA
AATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACTTCCATCTG
CGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAGCTCTGGTC
CCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAAGAGCACCA
AGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGCTGCTGGGC
CGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAGTACTTCTC
TAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTGCTTGCTGA
GCGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGCGAGA
GTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGG
ATTGCTGAGACGAAAACATATTCTCATTAACCCTTTAGGGAATAGGCCAG
GTTTTCACCGTACACGCACATCTTGCAATAATGTTGTAAAACTGCCGGAA
TCGTCCGGGTATTCACTCCAAGACGGATGAAACTTTTC
UFO03894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL27A-RD | 613 | CG15442-RD | 54..500 | 9..455 | 2235 | 100 | Plus |
| RpL27A-RA | 586 | CG15442-RA | 27..473 | 9..455 | 2235 | 100 | Plus |
| RpL27A-RC | 633 | CG15442-RC | 74..520 | 9..455 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4457739..4458058 | 330..11 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 4457384..4457509 | 455..330 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:49 has no hits.
UFO03894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:54 Download gff for
UFO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RA | 74..526 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:35 Download gff for
UFO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RC | 74..526 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:38 Download gff for
UFO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RC | 74..526 | 9..463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:38 Download gff for
UFO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4457740..4458064 | 1..329 | 98 | | Minus |
| 2L | 4457384..4457509 | 330..455 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:35 Download gff for
UFO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4457384..4457509 | 330..455 | 100 | <- | Minus |
| arm_2L | 4457740..4458064 | 1..329 | 98 | | Minus |
