UFO03895.5prime Sequence
774 bp (774 high quality bases) assembled on 2009-02-13
> UFO03895.5prime
CAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTTTCCTAAGT
TTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGCTGGCAGAA
GGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTCAACCAGAA
CGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGCAGCATCAT
TTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTGCAGCGGCA
GCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGAGCAGCAGA
GCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGGAACTGGCC
AAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAGGCCAAGAT
GGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGAAGATCTCG
AGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCCCGCGGCAG
TGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAACATCAATT
GCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGACAACGACAA
CGGCAACGGCAACGGCAATGGCCATGGCAACAACGTCGAAAAGCAACGGA
ACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCCAAGGGGG
ATTCGATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGATCATAATCATAATCCATAA
UFO03895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-RA | 3486 | CG34378-RA | 133..811 | 9..688 | 3345 | 99.6 | Plus |
| Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 9..682 | 3330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7132697..7133395 | 708..9 | 3435 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 534..649 | 205 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 529..647 | 203 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6859 | 531..655 | 203 | 66.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 522..618 | 203 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 165..647 | 190 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 172..340 | 189 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 498..647 | 183 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 538..647 | 166 | 63.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 562..647 | 142 | 65.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 562..647 | 142 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6892 | 522..618 | 139 | 61.6 | Plus |
UFO03895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:53 Download gff for
UFO03895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RB | 289..990 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:43 Download gff for
UFO03895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RA | 133..817 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:17 Download gff for
UFO03895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RA | 133..817 | 9..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:17 Download gff for
UFO03895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7132694..7133395 | 9..712 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:43 Download gff for
UFO03895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7132694..7133395 | 9..712 | 99 | | Minus |
