UFO03896.5prime Sequence
1017 bp (831 high quality bases) assembled on 2009-02-13
> UFO03896.5prime
CAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAGCGCAAAAG
AAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATCCGGTGCCA
GAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGAGAAGCGCA
AATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGCGTATGTCC
CAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCACTCGGAAGT
GGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAACGAGCAAGA
GCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCAGCAGCGAA
TCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCGGATTCGGA
CGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTCGGACAGCG
ACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGAAAAAACGA
GCCGGGAGTTCACCTGAATCTTCTGACGATCAAAGAGGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGGTCATGACTA
GTGCTTTGGGATTCCTCACCAATAAAAAACGCCCGGCGGCAACCGGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACC
AGGAGTCCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTTGCCGACGTGGAAGCCAT
CACAAACGGCATGATTGAACCCTGAATCGCCAGCGGCATCAGCACCTGGT
CGCTGCGTATAATATTGCCATGGTGAAACGGGGCGAGAGTTGTCATATTG
GCACGTTTATCAACTGTGAACTCACAGGATTGGCTGAACGAAACATTCTC
ATAACCCTTAAGAATAG
UFO03896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5516-RB | 733 | CG5516-RB | 90..614 | 9..533 | 2625 | 100 | Plus |
| CG5516-RA | 811 | CG5516-RA | 168..692 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15964163..15964642 | 54..533 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 15964051..15964097 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:45 has no hits.
UFO03896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:52 Download gff for
UFO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 160..694 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:06 Download gff for
UFO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 166..700 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:26 Download gff for
UFO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 164..698 | 1..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:26 Download gff for
UFO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15964047..15964097 | 1..55 | 92 | -> | Plus |
| 3R | 15964165..15964648 | 56..541 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:06 Download gff for
UFO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11789769..11789819 | 1..55 | 92 | -> | Plus |
| arm_3R | 11789887..11790370 | 56..541 | 99 | == | Plus |
