UFO03901.5prime Sequence
1094 bp (1000 high quality bases) assembled on 2009-02-13
> UFO03901.5prime
CAGTCGACATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTCAGCGCCGT
AATTTCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCCGGGGGCGA
CAAATCCGGCGAAGACCTGCACCCCATACGACGAACACTCCGTTTGCTCG
GGAACGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGGAACCGGAG
ACCGAGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTTTCAGGGGA
GCGCGACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCAGACCCATT
GCGATGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCATCGCCTAT
TGGCTGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTGGTCGAGAA
GGATGACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGGCGGTCTTT
GTCAGCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTATTTGCCGCA
GACTTCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTGCCTCTCCA
GTTTACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCACGCGGAAA
GCCTGAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCCGAAATGAA
CTTCTCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTAAACACCAA
GGGCATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTGGTTTAATC
CGTTGGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCTACGGCGCC
CATTTTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCCCAAACGGA
CATTTCTGTTGTCACAGATCTTGGTTCCAACGAGGTGCCTACACGGGCTT
GGAAAAAGCGGTCATCAACTGCCCGATGTACGCGACGCACTTGCAGTTCG
CCTGTGTGTAATAGCGCCGTGCTAGTCGACAATCGCGCGATAGCCAGATA
GCGTGATCAGATACTTCGGGTTCGCTGCCATCACGCAGCAGCGATAATGT
ACGCCATCACTCGCAGCCCTTGACTCTGAATGATATGCCATCGA
UFO03901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1708 | CG10655-RA | 115..1197 | 9..1066 | 4780 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19050497..19051035 | 945..410 | 2545 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19051097..19051498 | 410..9 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:41 has no hits.
UFO03901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:05 Download gff for
UFO03901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 109..1048 | 9..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:28 Download gff for
UFO03901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 115..1054 | 9..945 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:34 Download gff for
UFO03901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 115..1054 | 9..945 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:34 Download gff for
UFO03901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19051097..19051498 | 9..410 | 100 | | Minus |
| 2L | 19050497..19051034 | 411..945 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:28 Download gff for
UFO03901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19050497..19051034 | 411..945 | 99 | <- | Minus |
| arm_2L | 19051097..19051498 | 9..410 | 100 | | Minus |
