UFO03904.5prime Sequence
1141 bp (1034 high quality bases) assembled on 2009-02-13
> UFO03904.5prime
CAGTCGACATGGTTTTAACACCAACGAAAGATGGGCCCGACCAGGAGAGC
ATGCCGTTGCCGGCCGACAATGGGGAGTCACCAAGTAAACAGCAGGCCCC
TGTCAATCGGGATGAGATGCACTACTTGGATCTTCTGAGGCACATCATCG
CAAATGGAGAGCAGCGGATGGACCGCACGGAGGTGGGCACTCTGTCCGTG
TTCGGCAGTCAGATGCGCTTCGACATGCGGAACTCCTTTCCTTTGCTGAC
CACGAAGCGCGTCTTCTTCCGCGCGGTGGCCGAGGAGCTGCTGTGGTTCG
TGGCGGGCAAGACGGACGCCAAGCTGCTGCAGGCGAAGAATGTGCACATC
TGGGATGGGAACAGCTCCAGAGAATTTCTGGACAAGATGGGGTTCACGGG
GCGAGCCGTTGGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATT
TCGGGGCGCAGTACGGCACCTGCGACGACGACTACAGCGGCAAGGGGATC
GACCAGCTGCGCCAGGTGATCGACACCATCAGGAATAACCCCTCAGACCG
TCGCATCATCATGTCGGCTTGGAATCCACTGGACATCCCAAAGATGGCCC
TGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGGT
GAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGT
ACCCTTCAACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATG
TGACGGGTCTGAAGCCGGGCGACTTTGTTCACACCATGGGCGACACACAC
GTCTACCTGAACCACGTAGAGCCGCTGAAGGAGCAACTGGAGCGCACACC
GCGACCCTTTCCCAAGCTGATCATTAAACGTCAGTGCAGGACATCGAGGA
CTTCCGCTTCGAGGACTTTCAGATAGTCGACTACAATCCACATCCAAAAT
CCAAATGGACATGGCCGTGCCAAGCTTTCTAGACCATTCGTTTGGCCGGG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAATCATAATC
CCACTAGGCTAAGGGAAATCCTGTCATGACTATGCCTTGAATCTCCACCA
ATAAAAACGCCCGCGCGTCCCGACGGTCCTGAACAATTCGA
UFO03904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ts-RB | 1136 | CG3181-RB | 65..1031 | 5..969 | 4770 | 99.7 | Plus |
| Ts-RA | 1346 | CG3181-RA | 65..1031 | 5..969 | 4770 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2968608..2969574 | 969..5 | 4720 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:36 has no hits.
UFO03904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:03 Download gff for
UFO03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 44..1018 | 1..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:59 Download gff for
UFO03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 62..1036 | 1..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:20 Download gff for
UFO03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ts-RA | 62..1036 | 1..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:20 Download gff for
UFO03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2968603..2969575 | 1..975 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:59 Download gff for
UFO03904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2968603..2969575 | 1..975 | 99 | | Minus |
