UFO03906.5prime Sequence
1127 bp (1025 high quality bases) assembled on 2009-02-13
> UFO03906.5prime
CAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTGTGTTTTTC
TGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAAAGATATGG
CTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAGGAATAGGG
TGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAAAAATAGGA
GCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACGTATATCAA
GAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGAGCAAAACT
CAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCAAAAGGGGT
ACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTGTCTGAGGC
CCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAACGAAGGCA
CGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGGCTCTGGGA
TTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGACATTGACAA
GGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACTGATGACTA
TAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGGCTTTTCGG
CTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAATCTAAAGAG
GGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACTGCGAGAGA
TGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATCAAGAAGAA
TTTCTGCGAATCATGAAGAAGACTAGTTTGTATGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCGGCGGCTCACCGAGCGTTCTGAACAATT
CAGATGGAGTCCTGAGTCATTACTTGATTCTATTCACAGGAGTCCAGCGA
GCTCGATATCAATAACGCCCGCCTTTCCACTCATCGAAGTACATTATGTG
TAATTCATTAGCATTCTGCTCAATGGG
UFO03906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17493-RB | 1663 | CG17493-RB | 158..982 | 9..833 | 4125 | 100 | Plus |
| CG17493-RD | 5997 | CG17493-RD | 1..806 | 28..833 | 4030 | 100 | Plus |
| CG17493-RC | 1364 | CG17493-RC | 1..806 | 28..833 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22550548..22551104 | 277..833 | 2785 | 100 | Plus |
| 2L | 23513712 | 2L | 22550221..22550488 | 9..276 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 18208799..18209013 | 625..411 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:12 has no hits.
UFO03906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:02 Download gff for
UFO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RA | 102..937 | 3..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:06 Download gff for
UFO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RB | 152..987 | 3..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:17 Download gff for
UFO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RB | 152..987 | 3..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:17 Download gff for
UFO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22550215..22550488 | 3..276 | 98 | -> | Plus |
| 2L | 22550548..22551109 | 277..838 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:06 Download gff for
UFO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22442947..22443220 | 3..276 | 98 | -> | Plus |
| arm_2L | 22443280..22443841 | 277..838 | 99 | == | Plus |
