UFO03908.5prime Sequence
1083 bp (983 high quality bases) assembled on 2009-02-13
> UFO03908.5prime
CAGTCGACATGAATAATTGTATTAAAGTAGTGCCCATTGCCCTAAGGTGC
CAGCAGAGGACCATCAGTACTTCATCCGTGCTGGAGGGCAAGCGGAACTT
CCGTAAATTTAACGCATACAACAAGCGCGGTACGCGCGTGGTAAAGGAAG
CCCAGAAAACACTGGCCAATCCGCCGGTAGCCATTCACAAGCGAGGTGTA
CGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATTCCCGAGAA
AATTCCGGACATCATAGTTCCCGATTTGACCGGTTGTAAGCTAAAGCCAT
ACGTGTCCTATAAGGCGCCGGACGTCGTCCAGTCGGAGTTCACCAGCTTG
GATCTCTTCAACGCCGTCTACTCGCAGAAGATTATCGAAGATTTCAAGGC
GGGAAAACTGCAGAAGGACGGCAGCGCCAAGGAGCCCTCGGTCAATGAGC
AACTGACTCCGGAGGAGGCCTTGCAACGCGCTCGAAAGACGGGCAGCGAT
ATATTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAAG
AGTTGTCATATTGCCACGTTTAAATCAAACTGGTGAACTCACCAGGGATC
GCTGAGACGAAAACATATTCCTCAATAACCCTTTAGGAATAGCAGTTTCA
CCGTAACACGCCAATCTGCGATATATGTGTAGAACTGCCGAATCGTCTTG
TATTATCGATCGATGAAACGTTCAGTTGGCTAT
UFO03908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL41-RA | 594 | CG12954-RA | 54..551 | 9..506 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15217067..15217564 | 506..9 | 2490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 3431..3568 | 298..437 | 118 | 55.7 | Plus |
UFO03908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:01 Download gff for
UFO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 48..547 | 6..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:26 Download gff for
UFO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..551 | 6..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:33 Download gff for
UFO03908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL41-RA | 52..551 | 6..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:12:33 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:24:26 has no hits.
