UFO03909.5prime Sequence
1075 bp (973 high quality bases) assembled on 2009-02-13
> UFO03909.5prime
CAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGTTCTTCAAT
TTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTGCAGGACAT
AATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGACACCCGCCA
CAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTCGTTTCCAG
GCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGACAGCAAAGT
GTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTTCGTCGAGA
ATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGTTGGAGGAG
CTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCATTTGAAGAT
CGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAAGGAGATCG
AAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACATCACCAAG
CTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAGGAGACTGA
TGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACT
TGTCGCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCATA
TTGTCACGTTAAATCAACTGTGAACTCACCAGGATTGCTGAACGAAAAAC
TATTCTCATCTATCCCTTAGGTAATAGCAGTTTCACCGTACACGTCCCAT
CTGCATATTGGTACGAACTGCGAAT
UFO03909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mis12-RA | 839 | CG18156-RA | 115..657 | 9..551 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6968509..6968801 | 371..79 | 1465 | 100 | Minus |
| 3L | 28110227 | 3L | 6968217..6968398 | 551..370 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 6968864..6968934 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:37 has no hits.
UFO03909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:00 Download gff for
UFO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 101..654 | 1..555 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:25 Download gff for
UFO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 107..660 | 1..555 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:39 Download gff for
UFO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 107..660 | 1..555 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:39 Download gff for
UFO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6968213..6968396 | 372..555 | 98 | <- | Minus |
| 3L | 6968509..6968801 | 79..371 | 100 | <- | Minus |
| 3L | 6968865..6968938 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:25 Download gff for
UFO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6961313..6961496 | 372..555 | 98 | <- | Minus |
| arm_3L | 6961609..6961901 | 79..371 | 100 | <- | Minus |
| arm_3L | 6961965..6962038 | 1..78 | 94 | | Minus |
