UFO03910.5prime Sequence
1137 bp (977 high quality bases) assembled on 2009-02-13
> UFO03910.5prime
CAGTCGACATGAACAAGCGCAACCATATCCGCCTGCCGCCAGAGGTGAAT
CGGCTATTGTACGTGCGGAACCTGCCGTACAAAATCACCTCGGACGAGAT
GTACGACATATTCGGCAAATTTGGAGCCATTCGACAGATACGCGTAGGCA
ACACTCCGGAAACGCGTGGCACCGCCTTTGTCGTCTACGAGGACATTTTC
GATGCCAAGAACGCCTGTGACCATTTATCGGGTTTTAATGTGTGCAATCG
CTATCTGGTGGTGCTCTACTACCAATCCAACAAGGCCTTCAAGCGCGTGG
ACATGGACAAGAAACAGGAGGAACTGAACAACATTAAGGCCAAGTACAAT
CTGAAGACGCCTGAAGCTCCTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAACTCGTCGTGTATTCACTCAGA
GTCGATGAAAACGTTTCAGTTTGCTCATGACAACGTGTTACTAGGGTGAA
CACTTATCTCATAATTCTCAGCTCACCGTCTTTCCATTGCCATACGAATT
TCGGAATGACATTCATCAGGCTGGTCAGAATGTTACATAAGGCGATAAAA
CTTTGGCCTTATTTTCTTAACGGTCCTTAAAAAGGGC
UFO03910.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13298-RA | 920 | CG13298-RA | 195..560 | 6..371 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6192484..6192709 | 371..146 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 6192776..6192894 | 145..27 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:53 has no hits.
UFO03910.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:30 Download gff for
UFO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13298-RA | 199..567 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:11 Download gff for
UFO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13298-RA | 192..560 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:08 Download gff for
UFO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13298-RA | 192..560 | 1..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:08 Download gff for
UFO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6192484..6192709 | 146..371 | 100 | <- | Minus |
| 3L | 6192776..6192894 | 27..145 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:11 Download gff for
UFO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6185584..6185809 | 146..371 | 100 | <- | Minus |
| arm_3L | 6185876..6185994 | 27..145 | 100 | <- | Minus |
