UFO03912.5prime Sequence
1043 bp (991 high quality bases) assembled on 2009-02-13
> UFO03912.5prime
CAGTCGACATGCAGCATTATTTACTTTTGTTTGGCGCGCTCATCTCGCTA
CTGGCCTCAGCTTACGCCATCAAGTGCTATGCCTGCGAATCCGTCTACGA
GGCTAGTTGCGGCGACGACTTCGAAGTCGAGAACCATTTTAAATACGACT
GCGCCTTCATTGCTCCTCCGCGATTCCTGGAGAACGATCTGCTCAGCGTG
AATGCCACGGCCTGTTTGAAACGGGTATTCAAGGAAAACGGCGTGCGTAA
GATCGTCAGAGGCTGCTACTTCGGCGAGGTAAATGCCACCGATGTGTGGT
GCAAAATGGACCCCACCCTGTCGGCGGTGCAGAACTCAAGTTGTCATGTG
TGCGACAGCGAGAACTACTGCAACGGATCGGAAAATCATCCAGTGGATAA
ATGGAAAATCTTCGGCAGTCTGGTCTTGTTTCTCTTGGCAACTCAACTAC
TCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATACTTCTCAATAAACCCTTAGGGAAATAGG
CCAGGTTTTCACGGTAACACCGCCACATCTTGGCGAATAATATGTGGTAA
GAAACCTGCCGGAAATTCGGTCGTTGTATTCACCTCCAGAAGC
UFO03912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31675-RA | 1151 | CG31675-RA | 392..835 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20869116..20869334 | 234..452 | 1095 | 100 | Plus |
| 2L | 23513712 | 2L | 20868349..20868524 | 59..234 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 20868146..20868197 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:56 has no hits.
UFO03912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:56:06 Download gff for
UFO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31675-RA | 382..839 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:34 Download gff for
UFO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31675-RA | 384..841 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:55 Download gff for
UFO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31675-RA | 384..841 | 1..458 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:55 Download gff for
UFO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20868138..20868197 | 1..60 | 95 | -> | Plus |
| 2L | 20868351..20868524 | 61..234 | 100 | -> | Plus |
| 2L | 20869117..20869334 | 235..452 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:34 Download gff for
UFO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20868138..20868197 | 1..60 | 95 | -> | Plus |
| arm_2L | 20868351..20868524 | 61..234 | 100 | -> | Plus |
| arm_2L | 20869117..20869334 | 235..452 | 100 | == | Plus |
