UFO03913.5prime Sequence
1167 bp (1052 high quality bases) assembled on 2009-02-13
> UFO03913.5prime
CAGTCGACATGACTCAATATAGCCACGTTAAGTATACACAATCGCCGACG
CCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCTCCATTCGCCATT
ACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGGCGACCACCAAGA
GCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAAATGGACTTCGAG
TTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCCCCAAAAGGTGTA
CCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGTTCGCCCGCGACG
ATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGTGTCACCTCCCTG
GGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAGCATCTCGTTCAT
ATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCATCATAATAGCCT
CGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACAAATAGCCTGGAG
CCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCTAAATGCCTTCTT
TCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCTTCTACAACTGGC
TGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGCAACACCTTTTGG
TTGATGGGCATGGGCTATTATGTGTACATCACATTTCTGGGATACAATTG
CATTCCCCATCTGAAAAACACCCGCATCATTCTCATCGCCCTGCCCATCA
TCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTTGGAACGCAACGAT
ATCCTTTGTCAATTTCTACAAGTATCGCGTATATGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACACTAGGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACAATAAAAAACGCCCGGCGGCAACGAGCGTCCTGAACAAT
TCAGATGGAGTTCTGGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAATTACGCCCCGCCCTGCACTCATTCCAGTACTGGTT
GTAATCATTTAGACTATCTGCTGAAATTGAACTCATCCATAATGGATGGT
AGAACCTGCATGCATGC
UFO03913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 1021 | CG9773-RA | 96..920 | 9..834 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8675572..8675933 | 700..339 | 1810 | 100 | Minus |
| 3R | 32079331 | 3R | 8676188..8676518 | 339..9 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 8675384..8675517 | 834..700 | 625 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:50 has no hits.
UFO03913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:56 Download gff for
UFO03913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 71..895 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:45 Download gff for
UFO03913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:06 Download gff for
UFO03913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:06 Download gff for
UFO03913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8675384..8675517 | 700..834 | 99 | <- | Minus |
| 3R | 8675573..8675932 | 340..699 | 100 | <- | Minus |
| 3R | 8676188..8676518 | 9..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:45 Download gff for
UFO03913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4501106..4501239 | 700..834 | 99 | <- | Minus |
| arm_3R | 4501295..4501654 | 340..699 | 100 | <- | Minus |
| arm_3R | 4501910..4502240 | 9..339 | 100 | | Minus |
