UFO03915.5prime Sequence
1131 bp (1030 high quality bases) assembled on 2009-02-13
> UFO03915.5prime
CAGTCGACATGAGCGAAGACAAGATGAACGGACGCTCCATTCGCATCAAC
CGGCTGCCGGCCACCATTGTGGCCATCCTGCTGACCTTTGTCCTGGTCTA
CTTCCTCAATTTCCATCAGGAGGAGCGGCCAGCGATCTACGGCATGCTGC
GCAGTGAGAATCCCAGCCGCGTCAATCTACGCAAGATGCTAATAGCCGCC
ATACAGGCCGCCCAGCGTGGCGGTCTCGAGGTACTGGACGTGGCCCGGAG
TCGCCAGCTGAAGGAGCGCAGCAAGGGCAAGACGGACGAGGGCGTCAATG
ATCCCTTCACGGATGCCGACGGCCGGTCACATTGTGTGATGAAGCAGGGC
CTGCAGCGAATCTTTCCCCGCGTACAAATCTTCTCCGAGGAGGACAAGGA
GCACTGCAAGCAGGCACACGGCTATGATCTAGATCCAACGGTCCTCCACG
AGACCGCACAGATACCGGATGTGACCGTAAATGCCCAGGATGTCACTGTT
TGGGTAGATCCGTTGGATGCCACCAAGGAGTTCACCGAGGAGCTATACGA
GTACGTGACCACCATGGTGTGCGTGGCAGTGGCCGGAAGGCCCATCATTG
GCGTGATCCACAGCCCGTTCAATGGACAAACCGCGTGGGCGTGGGTGGGC
AACTCGATGTCTGAGTACCTATCCAATCTGCATCCGCAGCATTCGCCAAA
CAATCAGGCGCCCATCATTACAGTCTCGCGATCCCACACGGCAGGTGCCA
AGGATCTGGCGAGGGGCATCTTTGGCGAGAATGTCAGCCTGCTGACGGCG
GCGGGAGCTGGCTACAGTGCTCCAGGTGGTGGCCAACAATGCCACCGCCT
ATTTGCACACGTCGAAGATCAAGAAGTGGGACATTTGCGCCGGCGATGCT
ATTCTGCACGCATTGGGCGGCACAATGACCACGCTGAACGATCAGTTGAT
TAACTACGGACCAGAGGATCGCCAGTCAATACGGAGGGCCTGCTTGCCCA
CCTTGGAGCAACATGACTAGTACATGGACAAGCTGTCAATTATGGGAGGG
CGCCAATTGGCAAGCTTGCGCAAGCTTTTCTAGACATTCGTTTGGCGCCG
CGGGTAAGCTATGAGCCATAATCAAATCAAA
UFO03915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15743-RB | 1450 | CG15743-RB | 136..1200 | 9..1070 | 5035 | 98.6 | Plus |
| CG15743-RC | 1959 | CG15743-RC | 645..1709 | 9..1070 | 5035 | 98.6 | Plus |
| CG15743-RA | 1650 | CG15743-RA | 336..1400 | 9..1070 | 5035 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13286351..13286879 | 9..537 | 2645 | 100 | Plus |
| X | 23542271 | X | 13286951..13287457 | 533..1037 | 2315 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:15 has no hits.
UFO03915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:54 Download gff for
UFO03915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 322..1369 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:38 Download gff for
UFO03915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 336..1383 | 9..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:10 Download gff for
UFO03915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 336..1383 | 9..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:10 Download gff for
UFO03915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13286351..13286879 | 9..537 | 100 | -> | Plus |
| X | 13286956..13287474 | 538..1053 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:38 Download gff for
UFO03915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13180384..13180912 | 9..537 | 100 | -> | Plus |
| arm_X | 13180989..13181507 | 538..1053 | 97 | | Plus |
