UFO03917.5prime Sequence
1173 bp (1008 high quality bases) assembled on 2009-02-13
> UFO03917.5prime
CAGTCGACATGCCTGATGTGAAGTTCTTTGCCGTGCTGCCCACCAATGCC
AGTACCTCGGATCGAGTAACCCGGCTGTCCATCAGCGGCAACCTGCTCCA
GGATCCCCAGCAATTCTCGGTGAACTTTGTCAACAGTCCGGACTGCACGG
ACAACATCACATACCACTTCAAGGTGGTGATTCCCACACAGACGATTATC
GAGAATTATAAGCGGAACGGCGAGTGGAGCAGCCTGCACCAGGAGAAGTA
CCTGAACATCTTCGACGAGTCCTCCTTTTGCCTTGAGTTCGCCTTCGACT
ACGCAAATTCAATGATGCGGGTGTACCAGGGTAGGGATTCGGGCCACAAT
TTCATAACCGAGTACGAGACTCTCTTCTCCCTGTCCGACATCCAGGCTGT
ACAGGTGTGGGGCGATGTACAGAAGGTCAACCAGTTTGCCCTAAGCTACA
ACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCC
AGGTTTTCACGTACACGCCACATCTTGCGAATATATGTGTAAGAAGTGCC
GAAATCGTCGTGGTATCCCTCCAGAAGCGATGAAACGTTTCAGTTGTTCA
TGGAAAACGGTGGTAACAGGGGTGAACCTATCCCATATCCACACGCTCAC
GTCTTTTCATTTACATACGAAAATCGGATGAACATCCATCAGGCGAGTCA
AAAAAGGGAATTAAGGGCGGATA
UFO03917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 1749 | CG14879-RB | 343..786 | 9..452 | 2220 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 343..601 | 9..267 | 1295 | 100 | Plus |
| CG14879-RC | 1041 | CG14879-RC | 343..601 | 9..267 | 1295 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 694..879 | 267..452 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16347096..16347281 | 452..267 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 16347374..16347528 | 267..113 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 16348781..16348884 | 112..9 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:46 has no hits.
UFO03917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:53 Download gff for
UFO03917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 341..784 | 9..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:28 Download gff for
UFO03917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 9..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:52 Download gff for
UFO03917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 9..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:52 Download gff for
UFO03917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16347096..16347280 | 268..452 | 100 | <- | Minus |
| 3R | 16347374..16347528 | 113..267 | 100 | <- | Minus |
| 3R | 16348781..16348884 | 9..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:28 Download gff for
UFO03917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12172818..12173002 | 268..452 | 100 | <- | Minus |
| arm_3R | 12173096..12173250 | 113..267 | 100 | <- | Minus |
| arm_3R | 12174503..12174606 | 9..112 | 100 | | Minus |
