UFO03920.5prime Sequence
1116 bp (1004 high quality bases) assembled on 2009-02-13
> UFO03920.5prime
CAGTCGACATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCCAGAAGGGC
ACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTCTTTCCATT
GGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGCCCAGCTGC
CCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGACCCAAATG
GAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGCAACATCAA
CATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGGCGGAATGT
ACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCTTCTTCGTA
TTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTGTGCGACTT
TCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTCCACGGAGG
CGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCGATCGGAGT
AGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTATGTGTCCAC
ATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATTCACGGTGT
TGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCCAGGCATTT
TGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCACATCAAGTG
GGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACTCTTTGCCA
TGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGTCGGCAATC
TACGCAAATCGTCATAATCTTGGCCTGTACAAGAAAACGCATCCCGAGAG
ATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAGCTTGATCT
GCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTGTCCATCAC
AGCGCAGTGCTGGGACCCATGTGGGCGATTGACCTGGATTGACATTGAAC
AGTGGTGGACTTCCGATCGATGTTTTGGATCAGCACAGATCCTGAACTAC
CTTCGTTGTCTGCACTCTATTGTGGTATGATTCTTACTTTGTGACCTTTG
TACTTAGTTCTATGTC
UFO03920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8207-RA | 1562 | CG8207-RA | 129..1204 | 8..1075 | 4890 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15677812..15678516 | 959..255 | 3510 | 99.9 | Minus |
| 2R | 25286936 | 2R | 15678578..15678828 | 258..8 | 1255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 226..268 | 122 | 79.1 | Plus |
UFO03920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:50 Download gff for
UFO03920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 107..1073 | 1..969 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:41 Download gff for
UFO03920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 124..1090 | 1..969 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:00 Download gff for
UFO03920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 124..1090 | 1..969 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:00 Download gff for
UFO03920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15677812..15678514 | 257..959 | 99 | <- | Minus |
| 2R | 15678580..15678831 | 1..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:41 Download gff for
UFO03920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11565317..11566019 | 257..959 | 99 | <- | Minus |
| arm_2R | 11566085..11566336 | 1..256 | 98 | | Minus |
