UFO03921.5prime Sequence
1086 bp (1000 high quality bases) assembled on 2009-02-13
> UFO03921.5prime
CAGTCGACATGGACAACACCTGGGTGCACTCGTCTCCATACAGCCCCCTG
CCCCCATACGCGGTTATCGGTGGCCATGACTCGGACCGCACGCCCATCTA
TGTGGGTCGATCCTTTCACGAAGGCGAGAATCTTCCCGCCAAGGTCGTAC
CGAGCAAGGGATGCGCCTATGTGGCCTACGGTGGTGCGGAGCACACGAAG
ACGCACTACGAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTGCCCAGTTC
CAGCGGTGGAGTGCCACCGAATGCGGTGAGGAGCGGAACGACGCGAACGG
GCGAGCCGCTCTATGTGGGACGCGGACATCATGCCGGAAGCTTGACTGTG
GGCAAAGTTCATCCATCGCACGGCTGCCTATACATTCCATTTGGCGGCCA
GGAGGTGCGCATCAACACCTACGAGGTGCTCATCAAGCAGCAGCACGACG
TCTGGGTACCGGCCTCGCCCAGTTACACTCCTCCGGGCGCAGTGATCGCC
GGACACGACTCCGACCGTACTCCCATTTACGCCGGAAGGGCAATGCACGA
GGGTGAAATGCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAACCGCCTACG
TTTGCTTCGGCGGATACGAATTCCAGAAGCCCAGCTACGAGGTGCTCACT
GGCTACGGATATGTATGGATGAATTGCGGCCACAGCATTCCACCAAACGC
CGTAACCACGGGTCGTGCTCGCAATGGAGAGCTGCTGTACTATGGGCGAG
GACACTACCAGGGCAGTTTGACACCGGGTCTGATCTCGGCCAGCCAGCGT
TGCCTCTATATTCCGTACGGAGGTCGGGAGATTCGCATCAACTCGTACGA
GATTCTCTGCAGACAAGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGCC
CAGGTAGTGGTCATATCATATCATATCATATCATATCACACTAGCTAGAG
ATCTGTCATGACTAGTGCTTGATCTCACCAATAAAAACGCCGGCGGCAAC
GACGTCTGACATCGATGACTTCTGAGTCATTACTGGATCTATCATCCGAT
CAAGCTACTCGAATTCTATTATCGCTCTCGTCGTCC
UFO03921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RB | 1067 | CG44250-RB | 118..975 | 9..866 | 4290 | 100 | Plus |
| CG44250-RC | 1100 | CG44250-RC | 154..1008 | 12..866 | 4275 | 100 | Plus |
| CG32633-RB | 956 | CG32633-RB | 794..864 | 339..409 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12950496..12951350 | 866..12 | 4275 | 100 | Minus |
| X | 23542271 | X | 13562712..13562782 | 339..409 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:43 has no hits.
UFO03921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:49 Download gff for
UFO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RB | 105..974 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:51 Download gff for
UFO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RB | 112..981 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:36 Download gff for
UFO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RB | 112..981 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:36 Download gff for
UFO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12950490..12951352 | 8..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:51 Download gff for
UFO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8837995..8838857 | 8..872 | 99 | | Minus |
