UFO03922.5prime Sequence
1127 bp (1010 high quality bases) assembled on 2009-02-13
> UFO03922.5prime
CAGTCGACATGGCCGCCCACAGCTCGGCGGGACTTCTGGACTACGTCTTC
CCCACCATTGTGTCGGAGTATTACAACCAGGCGCCGACCAAGGAGGGATA
CCGCTTCGCGTCGGAGGAGCCAAATGGCAGCAAGCGCGAGGAGATGGGCG
TGATCATGAACCCCGGCACTCCCGACGAGCAACTGGTGGTCATGGGTATG
TACTCCTCGTACGATGAAAAGACTGACACCGAGACTGTGACGATGTACAC
CGCCGACAAGGATGGTTACAAGGCCCGTTACCAGATCAAGAACCGGAAAC
TGAGCCCCGGAGCCCTGAAGTCCGCTGCTGGAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAATAGGCCAGGTTTTCACCGTAACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGT
ATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTG
TTACAAGGGTGAACACTATTCCCATATCACCAGCTCACCGTCTTTCATTG
CCATACGAAATTCCGGATTGAGCATTCACCAGGCGGCAAGAATGTGATAA
AGCCGGATTAAACTTGTGGCTTATCTCTTTACGTCTCAAAAGGCGTAATT
CAGCTGACGACCTGTTATAGTCAATTG
UFO03922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15515-RB | 472 | CG15515-RB | 80..403 | 9..332 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29906157..29906379 | 110..332 | 1115 | 100 | Plus |
| 3R | 32079331 | 3R | 29905999..29906101 | 9..111 | 515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 900..967 | 123 | 68.1 | Plus |
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 5550..5622 | 198..270 | 113 | 65.3 | Plus |
UFO03922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:59 Download gff for
UFO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15515-RA | 534..861 | 9..337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:55 Download gff for
UFO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15515-RB | 80..407 | 9..337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:02 Download gff for
UFO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15515-RB | 80..407 | 9..337 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:02 Download gff for
UFO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29905999..29906099 | 9..109 | 100 | -> | Plus |
| 3R | 29906157..29906379 | 110..332 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:55 Download gff for
UFO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25731879..25732101 | 110..332 | 100 | == | Plus |
| arm_3R | 25731721..25731821 | 9..109 | 100 | -> | Plus |
