UFO03923.5prime Sequence
1120 bp (1018 high quality bases) assembled on 2009-02-13
> UFO03923.5prime
CAGTCGACATGTTGAAAACTATATCGATTGGTGTTCTTATCGCCCTCAGT
GGGGCCATCATTGCAGAAGGAAAACCTGTCCTTATTAAGGTTTTCGCTCC
CAGCGGTGGCTACTCCAGTGCCAGTTACCAAAATACAGTGGGAGCATCGC
CTTTCACCAGTCAGCTTATCTCTGGTCTTATCTCATCAAAAATTCAACTG
TTGAACAGCGTGCTACAGACCAAGTCTTCTTCCGGGGGGTTCCGTATTGG
TTTCAATAAGTCTGTCAATTTATTTGGCCCCACAAGCGCCACGAGCACCA
CCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAGACTTTACT
CCGGATGAATCTAGTAGGACTACTCAACTTTTTTACTCGACAACAACAGA
AAGTTTTGTCGAAACGCCGATCCCCACAATACATCCCGAGCCACCAGCCA
CTACCACTTCAGTGATCCCAATAGAGAGCACCACATCCGTAACACAACCA
CCCATCTTGACGACACCAAAACCTGGATACTCCTATCGCACCCCCATTTC
CCCCACCAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAACGGCATGATGACCTGATCGCAGCGGCATCA
GCACTTGTCGCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAAGAA
GTGTCATTATTGGCCACGTTTAAATCAAAACTGTGAACTCACCCAGGATT
GCTGAAACGAAAACATATTTCTCATAACCCTTTAGGAAATAGGCAAGTTC
ACGGTACACGCCCCATCTTGGCAATATATGTTGTAGAAACTGCCGGAATT
CGTCGTGGATTCACTCCGGA
UFO03923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40198-RB | 669 | CG40198-RB | 28..580 | 8..560 | 2765 | 100 | Plus |
| CG40198-RC | 1567 | CG40198-RC | 28..580 | 8..560 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4161597..4162049 | 560..108 | 2265 | 100 | Minus |
| 3R | 32079331 | 3R | 4162107..4162208 | 109..8 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:45 has no hits.
UFO03923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:58 Download gff for
UFO03923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RA | 267..830 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:10 Download gff for
UFO03923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RC | 22..585 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:05 Download gff for
UFO03923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RC | 22..585 | 1..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:05 Download gff for
UFO03923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4161597..4162048 | 109..560 | 100 | <- | Minus |
| 3R | 4162108..4162211 | 1..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:10 Download gff for
UFO03923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2505363..2505814 | 109..560 | 100 | <- | Minus |
| 3RHet | 2505874..2505977 | 1..108 | 96 | | Minus |
