UFO03924.5prime Sequence
1061 bp (987 high quality bases) assembled on 2009-02-13
> UFO03924.5prime
CAGTCGACATGCGCCCAAAAAGCACGACGAACCGGAGCGCAAGCCGCTGA
TCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGCGTTCCCAAC
GTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGCCGCCCCCGC
GGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTCGTGTTCCGG
TGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAGCCGGCCAGT
GTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTTGGTGAAGGG
AGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGCACATCAGCG
CCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGATCCGGATGTG
ACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGAGATCATCTC
CGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGAACTTGGACA
AACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTCAAGCCCGAA
TACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCAGAAGCGTCA
TCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCTTGAACAAGT
ATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAACCTTTCGGAC
AAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGATCAAGGAATG
GATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCTCCGGCGCCT
TCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGCAAGGCCTACGAG
ACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGTGACCGGGCT
ACAAGGACTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGGATGAAGTGA
AGCCTGGACCATCAGAGGGCACCAGGCTTCCCTAGGCTGCCTGACGCATT
CAACCGACTTCGAGAAGGCTTCATTATGGCGGAGGTGATGCACTTCGAAG
GACTTCAAGCG
UFO03924.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RE | 1491 | CG1354-RE | 109..1160 | 12..1059 | 4965 | 98.7 | Plus |
| CG1354-RA | 1498 | CG1354-RA | 119..1170 | 12..1059 | 4965 | 98.7 | Plus |
| CG1354-RD | 1684 | CG1354-RD | 129..1180 | 12..1059 | 4965 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9780509..9780892 | 248..631 | 1920 | 100 | Plus |
| X | 23542271 | X | 9781159..9781590 | 632..1059 | 1690 | 95.4 | Plus |
| X | 23542271 | X | 9779066..9779242 | 12..188 | 870 | 99.4 | Plus |
| X | 23542271 | X | 9780241..9780301 | 189..249 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:27 has no hits.
UFO03924.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:57 Download gff for
UFO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RA | 103..1167 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:35 Download gff for
UFO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 117..1181 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:46 Download gff for
UFO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RD | 117..1181 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:46 Download gff for
UFO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9780245..9780301 | 193..249 | 100 | -> | Plus |
| X | 9779054..9779246 | 1..192 | 95 | -> | Plus |
| X | 9780511..9780892 | 250..631 | 100 | -> | Plus |
| X | 9781159..9781591 | 632..1061 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:35 Download gff for
UFO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9673087..9673279 | 1..192 | 95 | -> | Plus |
| arm_X | 9674278..9674334 | 193..249 | 100 | -> | Plus |
| arm_X | 9674544..9674925 | 250..631 | 100 | -> | Plus |
| arm_X | 9675192..9675624 | 632..1061 | 96 | | Plus |
