UFO03925.5prime Sequence
1104 bp (937 high quality bases) assembled on 2009-02-13
> UFO03925.5prime
CAGTCGACATGTCCTCCCGACGCAGCTCCTTCAGGCGGAGGGAGAAGCCG
GCCTTCGAGCGCTTTAAGGACCACTGCCGCCACTTCACGGCGTTCATGTT
CAGCAACGTGGGCATCATTCTACTGGTCACATTTTATATTATCGGCGGAG
CGTTCATATTCCAGAGCATCGAGATTTTCGAGTACGAGCGGCTCAAGTCG
GAGAAGCCGCACCGGTTTATAGCACGGAACTTCAGTGGCGAGTGCCTCAG
CCGCATATGGGAGTTGACGGCGGAGAACATCAGCTTCTTCGACCACCACG
CCTACAGGAGACGGGTGAACGATGTGCTTCTGGATTATCAGAGGGCCATA
GTGAAAAAGCAGCTGAAGGGACCCGACGTGGAGCAGTGGAGCTTCTCCGG
AGCTTTTCTCTACTCACTGACGGTGATCACGACCATCGGGTACGGGAACA
TTACGCCGCACTCCGAGTGCGGAAAGCTGGTGACCATTCTATATGCGATA
ATTGGCATGCCGCTGTTCTTGCTCTACCTGTCCAACATTGGAGACGTCCT
GGCCAAGTCCTTCAAGTGGATATACTCGAAGGTGTGCCTATGTCGCATCT
GCCCCGGCGTGGCCAAGCGCCGGATAATCCGCGAGAGACGAAAAATGCGA
CAGTTGGCCAGAGCGCTCCAGATGCACGACATGGAGAATGCCCGGGGAAG
CAGCAGCTACACTAGCACCAGCAGTACCACCTCCTCCAACAGCAGCAGTA
GCGAATACACCAGAAGTTCCCGCCAGAGTTCCAGCCTCGTGGATATTCAG
TACACCGAGTCTGATTCGGAAATCCGAGCGGGAAATACGCGGCAGCACGG
ATGAAATTACAGTGCCAGTCACTGTGTGCGTCTTCTTTATGGGTCGGGTA
TTTCCTGTGGGGTGGGCTGCTCTTCCGGTCGTGGGGAGGTATGGAACTAT
CTGGATGGCAGCCTACATCCTGCTTAATACCCCTCACCAGCTATGCATTT
GGTCATCCGGTGCCATGCGAATCGGTGTATTACCTGCCCAACAGGGATAA
AGGGGAAGGTTACATTTACTTCACTGACCCTATATTCAGACTGCTCGGCA
TGGG
UFO03925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8713-RA | 1978 | CG8713-RA | 603..1689 | 6..1103 | 4660 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8095595..8095947 | 313..665 | 1765 | 100 | Plus |
| 2R | 25286936 | 2R | 8095211..8095519 | 6..314 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 8096013..8096239 | 665..892 | 1060 | 98.7 | Plus |
| 2R | 25286936 | 2R | 8096303..8096367 | 897..962 | 190 | 89.4 | Plus |
Blast to na_te.dros performed 2014-11-28 23:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6898 | 699..766 | 169 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1625 | 701..786 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1164 | 697..768 | 162 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6802 | 699..766 | 160 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2717..2850 | 643..785 | 154 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2391 | 696..785 | 146 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2434 | 699..765 | 146 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6809 | 699..752 | 144 | 74.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2392 | 699..765 | 137 | 67.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1136 | 699..752 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6867 | 697..765 | 122 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6825 | 699..747 | 119 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1141 | 697..766 | 115 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6781 | 710..766 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2831 | 700..748 | 110 | 69.4 | Plus |
UFO03925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:46 Download gff for
UFO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 598..1550 | 1..958 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:18 Download gff for
UFO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 600..1552 | 1..958 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:36 Download gff for
UFO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8713-RA | 600..1552 | 1..958 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:36 Download gff for
UFO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8095208..8095518 | 1..313 | 99 | -> | Plus |
| 2R | 8095596..8095947 | 314..665 | 100 | -> | Plus |
| 2R | 8096014..8096243 | 666..897 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:18 Download gff for
UFO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3982713..3983023 | 1..313 | 99 | -> | Plus |
| arm_2R | 3983101..3983452 | 314..665 | 100 | -> | Plus |
| arm_2R | 3983519..3983748 | 666..897 | 98 | -> | Plus |
