UFO03927.5prime Sequence
1028 bp (998 high quality bases) assembled on 2009-02-13
> UFO03927.5prime
CAGTCGACATGGCCAGAAGACCAGAGCATTCGGCGCCGCCAGAAATTTTC
TACAACGATGATGAGGCCAAGAAATATTCCACAAACACCCGCATCATTGA
GATCCAAGTAGAAATGGCCGAACGTGCCTTGGAACTATTGGCGCTCCCGG
ATGATGATGAGTCTCGGTTGATTTTGGACATCGGCTGTGGTTCTGGACTC
TCAGGTAGCGTTCTTGAGGACAGCGAGCACATGTGGATCGGCATAGATAT
TTCCAAGTCTATGCTCGATATCGCCGTGGAACGCGAGGTTGCTGGGGATG
TCATTCTGGGAGACATGGGCGAGGGAATGCCCTTTAAGCCGGGCACTTTC
GACGGCGCCATCTCGATCTCTGCCCTCCAATGGCTCTGCAATGCGGACAA
GTCGTATCACAATCCCCACAAGCGCCTGCTGAAGTTCTTTACCACCTTGT
TTTCCTGTCTGACACGCACCGCGCGAGCTGTCTTTCAATTTTATCCGGAG
AACTCCGATCAGATCGAGATGGTAACCTCGCAAGCCATGAAGGCGGGATT
CTACGGAGGATTGGTTGTCGACTATCCAAACTCTGCCAAGGCTAAGAAGT
ACTACCTGGTGCTCATGACTGGAGGATCTGCTGAGCTGCCGCAGGCTTTG
GGCTCACCTGAAGAGGAACGTCGTGTAAACTATATAAAGAAACGTGATGC
TTGCCGTGAGGCTCGGGGAAAAGCGCCAAAGAAATCCCGCGATTGGATCC
TAGCCAAGAAAGAGCGTCGACGTCGCAGGGGTTTGGAAACCCGTCCTGAC
ACAAGTACACTGCACGCAAGCGCAGCGGCAAATTTGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATATCATAATC
ATAATCATAATCCACACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTG
ATTCTCACATTAAAACGCCGGCGGCAACCGAGCGTTCTGAACAATCAGAC
GGAAGTCTGAGTCATACATGAAACTATC
UFO03927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10903-RB | 1164 | CG10903-RB | 158..985 | 9..835 | 4070 | 99.6 | Plus |
| CG10903-RA | 1124 | CG10903-RA | 118..945 | 9..835 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8031146..8031712 | 86..652 | 2835 | 100 | Plus |
| 3R | 32079331 | 3R | 8031781..8031966 | 651..835 | 835 | 97.8 | Plus |
| 3R | 32079331 | 3R | 8030944..8030982 | 9..47 | 195 | 100 | Plus |
| 3R | 32079331 | 3R | 8031046..8031083 | 48..85 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:33 has no hits.
UFO03927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:44 Download gff for
UFO03927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 114..947 | 6..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:24 Download gff for
UFO03927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 116..949 | 6..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:31 Download gff for
UFO03927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10903-RA | 116..949 | 6..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:31 Download gff for
UFO03927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8031782..8031966 | 652..835 | 98 | == | Plus |
| 3R | 8030942..8030982 | 6..47 | 97 | -> | Plus |
| 3R | 8031046..8031083 | 48..85 | 100 | -> | Plus |
| 3R | 8031146..8031711 | 86..651 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:24 Download gff for
UFO03927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3856664..3856704 | 6..47 | 97 | -> | Plus |
| arm_3R | 3856768..3856805 | 48..85 | 100 | -> | Plus |
| arm_3R | 3856868..3857433 | 86..651 | 100 | -> | Plus |
| arm_3R | 3857504..3857688 | 652..835 | 98 | == | Plus |
